Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., ABC transporter permease from Rahnella sp. WP5

 Score =  194 bits (494), Expect = 2e-54
 Identities = 108/315 (34%), Positives = 179/315 (56%), Gaps = 11/315 (3%)

Query: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFSSERPL--PPEVMANINAKYGLDKP 58
           M  ++ KR+   IP  + L  I F +M   PG+P  +       PE +A IN + GL+KP
Sbjct: 1   MGSYVLKRLLSTIPVFIGLSLIVFLIMAMIPGDPAQALLGAWATPENVARINQELGLNKP 60

Query: 59  VSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGTI 118
           + +QYL +  NI+ GDFG S+      ++E++      ++ +G  A + + ++G+  G +
Sbjct: 61  LYQQYLIWAGNILHGDFGRSYVLNRPVIDEVM-ERFGATLLLGGCALLLSTVLGLLAGIL 119

Query: 119 AALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGG----WQDGGF--- 171
           +A++Q    D+ I    +LG+ MPSF +  +LI +FA++   FPA G    W  GG+   
Sbjct: 120 SAVRQFGLGDHIITLLVLLGISMPSFWIGLLLIMLFAVELQWFPASGMYAIWAGGGWLDL 179

Query: 172 -EYMALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALL 230
             ++ LP + ++++     AR+TR +M+E L  +FIRTARAKGLS   ++ KHA + AL+
Sbjct: 180 LHHLTLPAITLAIVATGVIARLTRTAMLEVLRQDFIRTARAKGLSERKVIYKHAFRMALV 239

Query: 231 PVVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFN 290
            V+  +G     ++ G+V IET+F  PG+G + V A   RD  LV G  ++    ++L N
Sbjct: 240 SVIPVIGIQAGFVLGGAVYIETVFQWPGLGAMMVKAVATRDLLLVQGGVLVAAAAYVLIN 299

Query: 291 AIVDILLAYIDPKIR 305
              DIL A +DP+++
Sbjct: 300 LCADILQALLDPRLK 314