Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 305 a.a., permease protein, ABC-type oligopeptide transporter from Marinobacter adhaerens HP15

 Score =  190 bits (483), Expect = 3e-53
 Identities = 110/310 (35%), Positives = 179/310 (57%), Gaps = 12/310 (3%)

Query: 1   MLKFIAKRIFEAIPTMLVLITISF-----FLMRYAPGNPFSSERPLPPEVMANINAKYGL 55
           ML +I +R    +  +LV +T+SF     F     P    + E   P E++ +I  +YG 
Sbjct: 1   MLNYILRR---GLMALLVALTVSFGTFALFHFATDPAQTIAGE-DAPQEMVDDIREQYGF 56

Query: 56  DKPVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTV 115
           D+PVS QY  +L + +QGDFG S+ +K   V ELI     V++ + LAA   TV++ + +
Sbjct: 57  DRPVSVQYADWLGSALQGDFGQSYFWKQPVV-ELIQEHAKVTIVLALAALGVTVLIALPL 115

Query: 116 GTIAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQDGGFEYMA 175
           G  AALK N+W+D   +STA+    +P+F L  +LI +FA+ F +FP  G  D  +++  
Sbjct: 116 GISAALKPNSWVDRFALSTAVSAQAIPNFWLGLMLIILFAVTFPIFPVSG--DATWKHYV 173

Query: 176 LPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVVSY 235
           LP L +    V    R+TR  +++ L+S++IRTARAKG     ++++ A++ ALLP+VS 
Sbjct: 174 LPALVLGASSVPAVMRLTRTGLLDVLSSDYIRTARAKGFMGYRLILQQAMRNALLPIVSV 233

Query: 236 MGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDI 295
           +       + GSVV E++F + G+G+L V + FN D   V  + ++    F+L     D+
Sbjct: 234 LAVQLGHKLGGSVVTESVFSMNGLGRLAVESIFNSDIPTVQSLILIFVLTFVLLTLAADL 293

Query: 296 LLAYIDPKIR 305
           + A++DP+IR
Sbjct: 294 INAWLDPRIR 303