Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 314 a.a., nickel ABC transporter permease subunit NikB from Klebsiella michiganensis M5al

 Score =  177 bits (450), Expect = 2e-49
 Identities = 102/310 (32%), Positives = 179/310 (57%), Gaps = 8/310 (2%)

Query: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFS-----SERPLPPEVMANINAKYGL 55
           ML++  +R+   IP +     I F ++R   G+P       S  P  PE++A+  A  GL
Sbjct: 1   MLRYALRRVALLIPMIFAASVIIFLMLRLGTGDPALDYLRLSNLPPTPEMVASTRAMLGL 60

Query: 56  DKPVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTV 115
           D+P+  QY ++L   +Q DFG SF  +   +++++ S LP ++++  AA V  ++  V +
Sbjct: 61  DQPLIIQYGSWLWRALQLDFGVSFATQRPVLDDML-SFLPATLQLAGAALVLILLTSVPL 119

Query: 116 GTIAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQDGGFEYMA 175
           G  AA  ++   D+ +   A LGV MP+F LA +L+  F++     PA G+  GG+ ++ 
Sbjct: 120 GIWAARHRDRLPDFIVRIIAFLGVSMPNFWLAFLLVMFFSVYLQWLPAMGY--GGWRHII 177

Query: 176 LPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVVSY 235
           LP + ++ + +A  AR+ R SM+E      +  AR +GL+      +H L+ A LP+++ 
Sbjct: 178 LPAVSIAFMSLAINARLLRASMLEVAGQRHVTWARLRGLNAKQTERRHILRNASLPMITA 237

Query: 236 MGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDI 295
           +G     +I G+++IE IF  PG+G+  V+A FNRDY ++   T+++  +F++ N +VD+
Sbjct: 238 VGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVIVFVVCNLMVDL 297

Query: 296 LLAYIDPKIR 305
           L A +DP+IR
Sbjct: 298 LNAALDPRIR 307