Pairwise Alignments

Query, 543 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., periplasmic oligopeptide-binding from Synechococcus elongatus PCC 7942

 Score =  124 bits (310), Expect = 1e-32
 Identities = 116/507 (22%), Positives = 217/507 (42%), Gaps = 55/507 (10%)

Query: 42  LVRGNGTEVASLDPHKTEGVPESNVIRDLLEGLVNQDANG-NVVPGVAESWE--TTDNKT 98
           +V G    + +LDP     +    ++  L + L     +   +VP +A +    + D  T
Sbjct: 35  IVVGTAARLRTLDPADAYELLSGALLYALGDRLYTTRPDSVEIVPQLATALPEISPDGLT 94

Query: 99  FTFHIRKDAKWSNGDPVTAHDFVYSFQRAVDPATASPYSWYMEYTKMKNAKEIIAGEKDK 158
           +   +R+D ++ +G P  A    +S QR +       Y               + G++  
Sbjct: 95  YRIPLRQDVRFHDGSPFNAAAMAFSLQRFIKNGGRPSY---------------LLGDRVA 139

Query: 159 STLGAKAVDDHTLVFELETAVPYFVMMMGHTTVKPIHKATVEKFGDQWTKPENFVGNGAY 218
           S    +A  D+ L  +L+     F+ ++    +  +     +    Q+  P+ FVG G Y
Sbjct: 140 SI---QATGDYELTIQLKAPFAPFLALLTFPGLCAVSPQAYQPAAGQFL-PQQFVGTGPY 195

Query: 219 VLDKWVVNERLELKRNPQYWDDK--NTVLNKVTYLPIENQVAEMNRFLSGEIQITNE-LP 275
            L+ +   +RL L  N  YW +K  N  L+   +    N  + +    +G + +  + L 
Sbjct: 196 RLESFQ-GDRLRLAANRDYWGEKPRNEGLDIQIFSSPSNLYSALG---TGLVDVAYQGLD 251

Query: 276 LEHFKRLKKEHPES-VQVQGQ--LCTYYYGFNNKKPPFDDVRVRKALSYAIDRDVVSDAI 332
            E  + L+++  E  +Q+     L  YY   N   PP D   VR+AL+ AI+RDV+ D +
Sbjct: 252 AEQIRGLRQQAAEGRIQINNNDGLGIYYLTVNVLSPPLDRPEVRQALALAINRDVIRDRV 311

Query: 333 LGQGQKPAYFLTPEITAGFSPEMPAYGKMTQKERIAEAKKLLEEAGYNKSNPLKFTLLYN 392
                +P Y L P       P+ P       +    +A+ +L  AGY+ S PLK  L Y 
Sbjct: 312 FYGQVQPLYSLVPSEFPVSEPDFP-------RNNPEQARAVLTAAGYSSSKPLKLDLWYR 364

Query: 393 TSENHKKI-ATAIQSMWKTSLG--VDIALENQEWKTYLDTRRQGNFDVTRAGWCGDYNEA 449
           ++ N   + A+ +++  +  L   +D+ L+  E  T  +   +G + +    W  D+ +A
Sbjct: 365 SNLNSNVLAASTLRASVQQQLDGLIDLQLQGVESTTAYENLEKGAYPLFLLDWLPDFLDA 424

Query: 450 SSFLTLMLSSNTSNDPQ-------------YHSAEYDAVIEKAKTSTSEEERQKLYADAE 496
            ++L   L+ +  N  Q             Y+S   + ++++A  ST  + R +L  + +
Sbjct: 425 DNYLQPFLACSQGNPQQGCQSGSSYYQGSFYYSDRANQLLQQAGESTDPQARDRLLRELQ 484

Query: 497 KLLARDMPIAPIYQYVRSRLVSPTVGG 523
           +L A D+P  P++Q        P + G
Sbjct: 485 QLSAEDLPFIPLWQNREYLFSQPYIQG 511