Pairwise Alignments

Query, 543 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., peptide ABC transporter, periplasmic peptide-binding protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  129 bits (324), Expect = 3e-34
 Identities = 115/473 (24%), Positives = 214/473 (45%), Gaps = 45/473 (9%)

Query: 58  TEGVPESNVIRDLLEGLVNQDAN-GNVVPGVAESWETTDNKT-FTFHIRK------DAKW 109
           T G       + +   LV+ DA  G +VP +AE W  +D+   + F +R+       AK+
Sbjct: 50  TSGTTIDATSQQIYSRLVDYDAEEGKIVPALAERWSISDDGLEYRFVLRQGVQFHHSAKF 109

Query: 110 SNGDPVTAHDFVYSFQRAVDPATASPYSW-----YMEYTKMKNAKEIIAGEKDKSTLGAK 164
           +   P+ A D ++SFQR +D     P+ W     Y  +  +  A ++ +  K        
Sbjct: 110 TPSRPMNADDVLFSFQRILDDE--HPFHWVSRSGYPFFQSIDFANQVASVTKAGDNEVVF 167

Query: 165 AVDDHTLVFELETAVPYFVMMMGHTTVKPIHKATVEKFGDQWTKPENFVGNGAYVLDKWV 224
            ++     F    A  + V++      + +   T E+   Q       +G G + L ++V
Sbjct: 168 KLNHTDASFLSNLATDFAVILSAEYAAQQLRAGTPEQLDIQ------AIGTGPFRLVEYV 221

Query: 225 VNERLELKRNPQYWDDKNTVLNKVTYLPIENQVAEMNRFLSGEIQITNELPLEHFKRLKK 284
            NE +  +R+  YW  K   ++ + Y         +++ ++G+  ++  LP      L +
Sbjct: 222 KNEYIRYRRHEDYWG-KAPEIDMLVYDITSKSTVRLSKLITGDCSVS-ALPKAGELDLIE 279

Query: 285 EHPE-SVQVQGQLCTYYYGFNNKKPPFDDVRVRKALSYAIDRDVVSDAILGQGQKPAYFL 343
            HPE +++ +  L   ++ FN +K PF+DVRVRKALS AID+  +  A+       A  L
Sbjct: 280 AHPELTLESKPGLNVAFWAFNTQKAPFNDVRVRKALSLAIDKRNILAAVYQDTAVEAQSL 339

Query: 344 TPEITAGFSPEMPAYGKMTQKE---RIAEAKKLLEEAGYNKSN----PLKFTLLYNTSEN 396
            P       P   AY +  + +     + A  LL +AG    +     +     YN   N
Sbjct: 340 LP-------PSSWAYARDYELDIDYSPSRAMTLLADAGIRNLSIDIWAMPVARAYN--PN 390

Query: 397 HKKIATAIQSMWKTSLGVDIALENQEWKTYLDTRRQGNFDVTRAGWCGDYNEASSFLTLM 456
             K A  IQ+    ++GV   + + +W  +     Q ++D    GW  D ++  +F + +
Sbjct: 391 ALKTAELIQAD-LANIGVKANIISYDWSVFTQKLNQSDYDSVLIGWNADNSDPDNFFSPL 449

Query: 457 LS----SNTSNDPQYHSAEYDAVIEKAKTSTSEEERQKLYADAEKLLARDMPI 505
           LS    ++ SN  ++ +  +D ++ KA+++T   ER  LY +A+  +A+++P+
Sbjct: 450 LSCASMASGSNRSRWCNPAFDQLLSKARSTTDRLERTALYQEAQATVAKELPL 502