Pairwise Alignments

Query, 543 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., oligopeptide ABC transporter substrate-binding protein OppA from Pantoea sp. MT58

 Score =  589 bits (1519), Expect = e-173
 Identities = 292/542 (53%), Positives = 379/542 (69%), Gaps = 5/542 (0%)

Query: 4   NKITQALLLGAGLAVATTSFT---SFAANVPAGTKLAPVQELVRGNGTEVASLDPHKTEG 60
           N IT+  L+ AG+  A ++     +FAANVPAG +LA  QEL+RGNG EV SLDPHK EG
Sbjct: 2   NNITKKSLIAAGVFAAVSALAGNAAFAANVPAGVELAAKQELIRGNGDEVQSLDPHKIEG 61

Query: 61  VPESNVIRDLLEGLVNQDANGNVVPGVAESWETTDNKTFTFHIRKDAKWSNGDPVTAHDF 120
           VPE NV RDL EGL+  D+NG  +P VAES+E  D K +TFH+RK+AKWSNG+PVTA DF
Sbjct: 62  VPEDNVARDLYEGLLVNDSNGKPIPAVAESYENKDFKVWTFHLRKNAKWSNGEPVTAQDF 121

Query: 121 VYSFQRAVDPATASPYSWYMEYTKMKNAKEIIAGEKDKSTLGAKAVDDHTLVFELETAVP 180
           VYS++R VDP TASPY+ Y +Y  + N  +IIAG+K  + LG KA+DDHTL   L   VP
Sbjct: 122 VYSWERLVDPKTASPYASYPQYGHILNVDDIIAGKKPITDLGVKALDDHTLEVTLSEPVP 181

Query: 181 YFVMMMGHTTVKPIHKATVEKFGDQWTKPENFVGNGAYVLDKWVVNERLELKRNPQYWDD 240
           YF  ++ ++ + P++K  +EKFGDQWT+P+N+VGNGA+ LD  V+NER+ L RNP YWD+
Sbjct: 182 YFDKLLINSVMSPVYKPAIEKFGDQWTQPQNWVGNGAFKLDAHVINERITLVRNPNYWDN 241

Query: 241 KNTVLNKVTYLPIENQVAEMNRFLS--GEIQITNELPLEHFKRLKKEHPESVQVQGQLCT 298
           ++TVLNKVT+LPI ++V+++NR+ S  G     N LP+E FK+L++++ + + V   LCT
Sbjct: 242 EHTVLNKVTFLPISSEVSDVNRYFSENGSDMTYNNLPIELFKKLQRDNGKELHVDPYLCT 301

Query: 299 YYYGFNNKKPPFDDVRVRKALSYAIDRDVVSDAILGQGQKPAYFLTPEITAGFSPEMPAY 358
           YYY  NN+K PF D RVR AL   +DRD++ + +L QGQKPAY  TP  T G     P +
Sbjct: 302 YYYEINNQKAPFTDPRVRAALKLGLDRDIMVNKVLAQGQKPAYSYTPPSTDGMDILPPDW 361

Query: 359 GKMTQKERIAEAKKLLEEAGYNKSNPLKFTLLYNTSENHKKIATAIQSMWKTSLGVDIAL 418
            K +Q +R AEAKKLL EAGY    PL F LLYNTS+ HKK+A A  S+WK ++GV+I L
Sbjct: 362 FKWSQDKRNAEAKKLLAEAGYTADKPLTFNLLYNTSDLHKKLAIAASSIWKKNIGVNIKL 421

Query: 419 ENQEWKTYLDTRRQGNFDVTRAGWCGDYNEASSFLTLMLSSNTSNDPQYHSAEYDAVIEK 478
           ENQEWKT+LDTR QGNFDV+RA WC DYNE +SFL  MLS+++SN   Y S  +D VI  
Sbjct: 422 ENQEWKTFLDTRHQGNFDVSRAAWCADYNEPTSFLNTMLSNSSSNTSHYKSEAFDKVIRD 481

Query: 479 AKTSTSEEERQKLYADAEKLLARDMPIAPIYQYVRSRLVSPTVGGYPSNNAEDKIYAKDL 538
           A  +   + R   Y  AE++L +D  I P+Y YV +RLV P VGGY   +  DK   KD 
Sbjct: 482 AIKAPDAKARAVDYQKAEQILDKDSTIVPVYYYVNTRLVKPYVGGYTGKDPLDKTLDKDF 541

Query: 539 YI 540
           YI
Sbjct: 542 YI 543