Pairwise Alignments

Query, 534 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 671 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score = 91.3 bits (225), Expect = 1e-22
 Identities = 120/491 (24%), Positives = 206/491 (41%), Gaps = 110/491 (22%)

Query: 139 DLSYLEQQLAHARKWTLLIVLGEMGLVALFSYLLGNALTR---RLTELKTATD------- 188
           DL  L +Q+     ++L    G    +   +      L+R   R  +LK A D       
Sbjct: 193 DLEALSRQVTREEDYSLRAKPGNQDEIGRLADAFNTMLSRMEAREQQLKRARDDAQEAFD 252

Query: 189 -------QITFGNREVLLEIQGHDEISRVAHSFQQMVQSLRHSEATMR---DYQHQLEQW 238
                  +    NR++ LE+Q   +I +    FQ+ + S+  S  +     D Q  + QW
Sbjct: 253 HAQGLAEETRHSNRKLELEVQVRSKIEQKLTGFQKYLNSIIDSMPSALIALDEQLYVTQW 312

Query: 239 NLE--------LEDKVNQRT-------ETLLAKNQQLEEMN------------------- 264
           N E        L+D +NQ         +  LA+ ++  E +                   
Sbjct: 313 NQEASALSGTPLDDALNQPVFVAFEPLKPFLAQIRRTSEQHVVAKIERVTWLRNDEPHHY 372

Query: 265 ----------------------TKLTLMKDKLVETEKMISIGTLAAGFAHEINNPNGALK 302
                                 T+   M++ +V++EKM+S+G+LAAG AHEINNP GA+ 
Sbjct: 373 ALTCYPLTGAGGRGVVIRIDDITQRINMEEMMVQSEKMLSVGSLAAGMAHEINNPLGAIL 432

Query: 303 SHLQ----LLQQDFNQLKVGFEQIDILLSGSDFHGKFTQTKNALYLEESFSGIEESLRDA 358
            + Q     L  +  + +   E+  + L   +   ++ Q +    + +   GI+++   A
Sbjct: 433 HNAQNIRRRLSPELERNREAAEETGVRLEAVN---QYLQRRE---VPQLLDGIQQAGSRA 486

Query: 359 LHCVDRIKTIVDKVQRCQAEPALHDSSWVSPLSLVEQAIQICG----LREWVVWKEQTL- 413
              V  + +      R  A+  L       P+ L++QA++I G    L E   +K   + 
Sbjct: 487 AKIVSHMLSFSRMSNRQLADCHL-------PV-LIDQALEIAGNDFALMEGFDFKAIDIV 538

Query: 414 --YPP---LIYCYSNDFVTALSAILNNAYQ---AYASDDPMIRIELSLRHDHQQLEIEVR 465
             + P    + C  N+    L  +L NA Q   A+   +P  +I L  R +    EI+V 
Sbjct: 539 RDFDPRVDRVPCIGNELEQVLLNLLKNAAQAIHAHQVGEPG-QIILRTRLNPPWAEIQVE 597

Query: 466 DFGRGMSIEEKQHAFDPFFTTHDVGKGVGLGLTEAYSSI-KKYDGDIQLFSELRQGTRVL 524
           D G G+    ++  F+PFFTT +VG+G GLGL+ +Y  I   + G +++  +   GT   
Sbjct: 598 DNGGGIPENVRKRIFEPFFTTKEVGQGTGLGLSVSYFIITNNHQGQMEVQCQPGHGTTFT 657

Query: 525 ITLPL-APNKP 534
           + LPL +P +P
Sbjct: 658 LRLPLNSPAEP 668