Pairwise Alignments

Query, 534 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 678 a.a., PAS from Pseudomonas syringae pv. syringae B728a

 Score = 99.0 bits (245), Expect = 5e-25
 Identities = 85/290 (29%), Positives = 148/290 (51%), Gaps = 29/290 (10%)

Query: 259 QLEEMNTKLTLMKDKLVETEKMISIGTLAAGFAHEINNPNGALKSHLQLLQQDFN-QLKV 317
           +++++  +++L ++ +V++EKM+S+G LAAG AHEINNP GA+  ++Q +++  + +L  
Sbjct: 390 RIDDITQRISL-EEMMVQSEKMLSVGGLAAGMAHEINNPLGAILHNVQNIRRRLSPELPK 448

Query: 318 GFEQIDILLSGSDFHGKFTQTKNALYLEESFSGIEESLRDALHCVDRIKTIVDKVQRCQA 377
             EQ +    G D   +      +  + +   GI+++   A   V  +     ++   Q 
Sbjct: 449 NIEQAEA--DGIDL-AQVNHYLESREVPKLLDGIQQAGARAAKIVSHMLNF-SRLSSRQL 504

Query: 378 EPALHDSSWVSPLSLVEQAIQICG----LREWVVWKEQTLY----PPL--IYCYSNDFVT 427
            P           +L++QA++I      L     +K Q +     P L  + C +N+   
Sbjct: 505 SPC-------DLPALIDQAVEIASNDFDLTIGFDFKGQHIIRQFDPELGPVPCIANELEQ 557

Query: 428 ALSAILNNAYQAY----ASDDPMIRIELSLRHDHQQLEIEVRDFGRGMSIEEKQHAFDPF 483
            L  +L NA QA      S++P  RI L  R +    EI+V D G GMS   ++  F+PF
Sbjct: 558 VLLNLLKNAAQAIHQRPESEEPG-RITLRTRLNPPWAEIQVEDNGIGMSESIRKRTFEPF 616

Query: 484 FTTHDVGKGVGLGLTEAYSSI-KKYDGDIQLFSELRQGTRVLITLPLAPN 532
           FTT ++G+G GLGL+ +Y  +   + G +++ S L  GT   + LPL  N
Sbjct: 617 FTTKEIGQGTGLGLSVSYFIVTNNHKGQMEVHSSLGTGTCFTLRLPLVAN 666