Pairwise Alignments

Query, 534 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1250 a.a., ligand-binding sensor domain-containing protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 97.8 bits (242), Expect = 2e-24
 Identities = 99/394 (25%), Positives = 172/394 (43%), Gaps = 25/394 (6%)

Query: 140  LSYLEQQLAHARKWTLLIVLGEMGLVALFSYLLGNALTRRLTELKTATDQITFGNREVLL 199
            LSY  Q+L  A   TLL+V+     VA     + + L R + E + +    T G  + L 
Sbjct: 868  LSYPPQELNLAN--TLLVVIHPDD-VAKVRAAMDDCLYRGVDEFEVSYRGRT-GEDQWLW 923

Query: 200  EIQGHDEISRVAHSFQQMVQSLRHSEATMRDYQHQLEQWNLELEDKVNQRTETLLAKNQQ 259
             +     ISR      + +     +   +++ +  L + N ELE +V  RT+ L  KN++
Sbjct: 924  VLNHGKVISRDETGRPERIMGTVKNIQRLKEAEEALRELNAELEQRVTVRTQELQDKNEE 983

Query: 260  LEEMNTKLTLMKDKLVETEKMISIGTLAAGFAHEINNPNGALKSHLQLLQQDFNQLKVGF 319
            L  +  +L   +D+L++ EKM ++G L A   HE+N P G   +    LQ    +    F
Sbjct: 984  LNTLLEELRQTRDELLDKEKMATLGGLVASITHEVNTPIGISVTAASHLQDRVREFTAAF 1043

Query: 320  EQIDILLSGSDFHGKFTQTKNALYLEESFSGIEESLRDALHCVDRIKTIVDKVQRCQAEP 379
            E+           G+  +    LY  E    + +  +  L  ++R   ++   ++   + 
Sbjct: 1044 EK-----------GEVDEDDFVLYQSE----VNDCCKLMLTNLERAAKLISSFKKVSVDQ 1088

Query: 380  ALHDSSWVSPLS--LVEQAIQICGLREWVVWKEQTLYPPLIYCYSND--FVTALSAILNN 435
            + H+      LS  + E  + +  L      K      P +   SN   F   +S + NN
Sbjct: 1089 S-HEELREFDLSQYVDEIFLSLNPLLSRTPHKYSYECDPQLLVNSNPGIFYQIISNLFNN 1147

Query: 436  AYQAYASDDPMIRIELSLRHDHQQLEIEVRDFGRGMSIEEKQHAFDPFFTTHDVGKGVGL 495
            +      D     + L+++   + + ++ RD G GMS E + + F PFFTT     G GL
Sbjct: 1148 SIIHAYPDGRSGTLRLTIKRTPEGIVLDYRDDGCGMSQEIQDNIFTPFFTTKRGKGGSGL 1207

Query: 496  GLTEAYSSIKK-YDGDIQLFSELRQGTRVLITLP 528
            G+   Y+ + +  +GDI+L +   QG   +I LP
Sbjct: 1208 GMNIVYNLVHQVLEGDIELITAPHQGAHFIIRLP 1241