Pairwise Alignments

Query, 534 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 900 a.a., PAS domain S-box protein from Rhodopseudomonas palustris CGA009

 Score = 75.5 bits (184), Expect = 8e-18
 Identities = 68/265 (25%), Positives = 121/265 (45%), Gaps = 24/265 (9%)

Query: 271 KDKLVETEKMISIGTLAAGFAHEINNPNGALKSHLQLLQQDFNQLKVGFEQIDILLSGSD 330
           +  L+E EK+ ++G L AG AHE+NNP G   +    L++     K      ++      
Sbjct: 637 QQSLIEAEKLAALGRLVAGVAHEVNNPVGISLTVASALER-----KAAVFATEVA----- 686

Query: 331 FHGKFTQTKNALYLEESFSGIEESLRDALHCVDRIKTIVDKVQRCQAEPALHDSSWVSPL 390
             G+  +++   +LE +     + + +    ++R   ++   ++  A+    D       
Sbjct: 687 -RGELKRSRLNEFLETTRDASSQLVAN----LNRAAELIQSFKQVAADRNYSDQRLFDLG 741

Query: 391 SLVEQAIQIC--GLREWVVWKEQTLYPPLIY-CYSNDFVTALSAILNNAYQAYASDDPMI 447
            L EQ +     GLR+  +       P L+   Y   +   L+ +  N+      +    
Sbjct: 742 DLTEQVVMSLRPGLRKHNLTLNVECQPCLMMNSYPGPYGQVLTNLFLNSVAHAFPNGRAG 801

Query: 448 RIELSLR---HDHQQLEIEVRDFGRGMSIEEKQHAFDPFFTTHDVGKGVGLGLTEAYSSI 504
            +E+ +R   +DH  + +   D G GMS++ ++ AFDPFFTT     G GLGL   Y+ +
Sbjct: 802 TVEIEVRAAGNDH--VVVAYSDDGCGMSLDVRRRAFDPFFTTRRDQGGTGLGLHIVYNIV 859

Query: 505 -KKYDGDIQLFSELRQGTRVLITLP 528
             +  G ++L SE   GTR+L+TLP
Sbjct: 860 TNRLGGRLELDSEPGNGTRILMTLP 884