Pairwise Alignments

Query, 534 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1226 a.a., PAS/PAC sensor signal transduction histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score = 80.5 bits (197), Expect = 3e-19
 Identities = 82/342 (23%), Positives = 145/342 (42%), Gaps = 33/342 (9%)

Query: 194  NREVLLEIQGHDEISRVAHSFQQMVQSLRHSEATMRDYQHQLEQWNLELEDKVNQRTETL 253
            NR  ++E     +  R+A + + + Q         ++ +H L + N  LE +VN+RT  L
Sbjct: 905  NRGQVVERDEAGKAVRIAGTIKNIQQQ--------KETEHALRELNQRLEQRVNERTLEL 956

Query: 254  LAKNQQLEEMNTKLTLMKDKLVETEKMISIGTLAAGFAHEINNPNG---ALKSHLQLLQQ 310
              +N +L+    +L   + +L++ EKM ++G L A   HE+N P G      SHLQ   +
Sbjct: 957  QQRNDELKHTLDELEHTQGELMDKEKMAALGGLVASITHEVNTPIGISVTAASHLQESVK 1016

Query: 311  DFNQLKVGFEQIDILLSGSDFHGKFTQTKNALYLEESFSGIEESLRDALHCVDRIKTIVD 370
             F+QL                 G+ T+     Y  E    + E  R  L  ++R   ++ 
Sbjct: 1017 HFDQLY--------------RRGEITEEDFEQYQNE----VAECCRLILANLERASKLIA 1058

Query: 371  KVQRCQAEPALHDSSWVSPLSLVEQ---AIQICGLREWVVWKEQTLYPPLIYCYSNDFVT 427
              ++   + +  D       + +E+   ++     R    +  Q     +I      F  
Sbjct: 1059 SFKQVSVDQSHEDVREFDLHAYLEEIFISLNPMLSRTPHEYSYQCPEKLIIQSTPGAFYQ 1118

Query: 428  ALSAILNNAYQAYASDDPMIRIELSLRHDHQQLEIEVRDFGRGMSIEEKQHAFDPFFTTH 487
             +S + NN+      D    ++ L +    Q + I  +D G GMS E +   F PFFTT 
Sbjct: 1119 IVSNLFNNSVIHAYPDGKSGKLSLDVARTDQGICITYQDDGCGMSQEVQAQVFQPFFTTK 1178

Query: 488  DVGKGVGLGLTEAYSSIKK-YDGDIQLFSELRQGTRVLITLP 528
                G GLG+    + + +   G+I + S+  +G+  +I LP
Sbjct: 1179 RGKGGSGLGMNIVSNIVTQVLKGEISIDSQEGRGSTFIIHLP 1220



 Score = 26.2 bits (56), Expect = 0.008
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 55  NPVLAYDLASI--DSAATLMMSNQDIVYVAVENPHGKLLTF 93
           N +L  D+ S+  DS  TL +     VY  ++NP G+L  F
Sbjct: 350 NNLLNVDIRSLLEDSQGTLWVGTASGVYRGLKNPRGELTGF 390