Pairwise Alignments

Query, 534 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 709 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 89.7 bits (221), Expect = 3e-22
 Identities = 104/415 (25%), Positives = 182/415 (43%), Gaps = 57/415 (13%)

Query: 125 EVSGTLFGTVFIGFDLSYLEQQLAHARKWTLLIVLGEMGLVALFSYLLGNALTRR----- 179
           ++ G   G ++ GF     E    H      L+ + E+G + +   L+   L  R     
Sbjct: 315 DIRGQRVGMIYTGFS----ESPFIH----NYLLNIIELGTILMLVLLISGLLVYRGAYSL 366

Query: 180 ---LTELKTATDQITFGN--REVLLEIQGHDEISRVAHSFQQMVQSLRHSEATMRDYQHQ 234
              +  +      +  G   R   L +   +E+S +A  F +M+  L+   A ++    Q
Sbjct: 367 LQPIERIHHVVQAVQSGRNVRIGALGLDRDNELSNLAEQFDRMLDLLQRRNAQIQAAAEQ 426

Query: 235 LEQWNLELEDKVNQRTETLLAKNQQLEEMNTKLTLMKDKLVETEKMISIGTLAAGFAHEI 294
           LE        KV +RT +L  K  +L+     L   + +LV  EK+ ++G L AG AHEI
Sbjct: 427 LEM-------KVEERTRSLQDKTLELQRNVALLNETRQQLVTNEKLTALGELTAGIAHEI 479

Query: 295 NNPNGALKSHLQLLQQDF-NQLKVGFEQIDILLSGSDFHGKFTQTKNALYLEESFSGIEE 353
           NNP   +  +++LL+ +  ++ +V  E+ID+++      G+ +    +L L+ S  G E 
Sbjct: 480 NNPTAVILGNMELLRYELGDKAEVVKEEIDLVIQQV---GRISTIIRSL-LQYSRPG-EF 534

Query: 354 SLRDALHCVDRIKTIVDKVQRCQAEPALHDSSWVSPLSLVEQAIQICGLREWVVWKEQTL 413
           +    +H    I  I++++                 L LV  +IQ    +E V+  E   
Sbjct: 535 NAPLEMH---PITPIIEEM-----------------LVLVRHSIQ---KQEVVLITELNA 571

Query: 414 YPPLIYCYSNDFVTALSAILNNAYQAYASDDPMIRIELSLRHDHQ-QLEIEVRDFGRGMS 472
             P+           ++ ++N A+         +R    ++ D    ++IEV D G G+ 
Sbjct: 572 SCPVQVNRPQLLQVLINLVVNAAHAMDGKGRIWVRTYDWVQQDIAIGVKIEVEDEGSGIE 631

Query: 473 IEEKQHAFDPFFTTHDVGKGVGLGLTEAYSSIKKYDGDIQLFSELRQGTRVLITL 527
            E+    FDPF+TT     G GLGL+ +Y  IK+  G I++ S L +G+   I L
Sbjct: 632 PEQLGRIFDPFYTTRK--DGTGLGLSLSYGIIKRIGGTIEVSSVLGKGSIFTIGL 684