Pairwise Alignments

Query, 534 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 82.0 bits (201), Expect = 5e-20
 Identities = 105/472 (22%), Positives = 199/472 (42%), Gaps = 69/472 (14%)

Query: 77  DIVYVAVENPHGKLLTFKGNRDLFEAYHTINDQDFSKLQSIYPITDVIEVSGTLFGTVFI 136
           DI Y+++++  G            ++++  N +    L  I+P+           GT+ +
Sbjct: 87  DINYISIKDDSG------------QSWNAGNSKPTHTLNKIFPLVYKSPTDNINVGTLEV 134

Query: 137 GFDLSYLEQQLAHARKWTLLIVLGEMGLVALFS-YLLGNALTRRLTELKTATDQITFGNR 195
             D+  + Q+L       LL    +  LVA F  +L+   +T+ L +L     +I     
Sbjct: 135 QVDMDAIYQRLYDKAILILLSNGIKTFLVAGFILFLVWYNITKHLDKLSNYCKRINLDAD 194

Query: 196 EVLLEIQGH---DEISRVAHSFQQMVQSLRHSEATMRDYQHQLE--------------QW 238
              L+ +     DE  +VA +   M   LR+S   ++  + +L+               +
Sbjct: 195 FEPLQFERKEKADEFKQVADAINSMQGQLRNSFEALKSSKAELQTALEDRERLLKLERSY 254

Query: 239 NLELEDKVNQRTETLLAKNQQLEEMNTKLTLMKDKLVETEKMISIGTLAAGFAHEINNPN 298
             EL  +V +RT       Q+LE+    L   +  LVE EKM ++G L +G AHEIN P 
Sbjct: 255 KEELARQVKERT-------QELEQSLAALKRAQQVLVEQEKMAALGGLVSGVAHEINTPI 307

Query: 299 G-------ALKSHLQLLQQDFNQLKVGFEQIDILLSGSDFHGKFTQTKNALYLEESFSGI 351
           G       A  SH++ L +  +  +   ++I+ +L                  ++S   I
Sbjct: 308 GICLTAASAQLSHIEELIELIHSEQATLDEINAILD---------------EYQQSCELI 352

Query: 352 EESLRDALHCVDRIKTIVDKVQRCQAEPALHDSSWVSPLSLVEQAIQICGLREWVVWKEQ 411
             ++  A   + + KTI   + R   E        ++  + ++Q ++   L    +  + 
Sbjct: 353 VRNITKASSLIQKFKTIA--IDRSHEE-----HQCINLQTQLKQIVESSLLMHPTLKAQT 405

Query: 412 TLY-PPLIYCYSNDFV--TALSAILNNAYQAYASDDPMIRIELSLRHDHQQLEIEVRDFG 468
            L+  P +   +N  +    +S IL+NAY     D    +I +S   + + + I +++ G
Sbjct: 406 QLHVDPSLNIQTNASLLNQIVSNILSNAYTHAFQDREDNQILISTNIEQEVVNISIQNNG 465

Query: 469 RGMSIEEKQHAFDPFFTTHDVGKGVGLGLTEAYSSIKKYDGDIQLFSELRQG 520
             +  E  +H F+PFFTT+    G GLGL+ A+++     G +   ++ + G
Sbjct: 466 IAIPPEIAEHMFEPFFTTNRSKGGTGLGLSAAFNAATLLKGTMSYQADSQLG 517