Pairwise Alignments

Query, 534 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 453 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 88.2 bits (217), Expect = 6e-22
 Identities = 81/300 (27%), Positives = 130/300 (43%), Gaps = 18/300 (6%)

Query: 230 DYQHQLEQWNLELEDKVNQRTETLLAKNQQLEEMNTKLTLMKDKLVETEKMISIGTLAAG 289
           DYQ QL+  N +LE +V  RT       Q+LE   + L   +  L+E EKM ++G+L AG
Sbjct: 169 DYQQQLKAINADLEAQVELRT-------QELETALSDLRSTQHHLIENEKMAALGSLVAG 221

Query: 290 FAHEINNPNGALKSHLQLLQQDFNQLKVGFEQIDILLSGSDFHGKFTQTKNALYLEESFS 349
            AHE+N P G   + +     +   LK  FEQ ++     D    F  T     +++   
Sbjct: 222 VAHEVNTPLGIAVTSVTHCLDEVALLKAAFEQNEL---DEDKFLTFINT-----MQDGLG 273

Query: 350 GIEESLRDALHCVDRIKTIVDKVQRCQAEPALHDSSWVSPLSLVEQAIQICGLREWVVWK 409
            IE +L  A   V   K         + E     +      S +   ++   +   V   
Sbjct: 274 LIERNLTRAAELVHNFKRTAADQSVLERERFNLKAYLFQIFSSLRPLMRKKNIALTVELD 333

Query: 410 EQTLYPPLIYCYSNDFVTALSAILNNAYQAYASDDPMIRIELSLRHDHQQLEIEVRDFGR 469
           EQ          +  F   ++    + +  + + D  I I +  +  +  + ++ +D G 
Sbjct: 334 EQIFIESYPGAIAQIFTNLVANSFRHGFPEHFTGDKKITIRVEKQGSN--ICMQYQDNGV 391

Query: 470 GMSIEEKQHAFDPFFTTHDVGKGVGLGLTEAYSSI-KKYDGDIQLFSELRQGTRVLITLP 528
           GM+ E K  AF+PFFTT     G GLG++  Y+ + +K  G I L S+  QG  + I LP
Sbjct: 392 GMTDEVKIKAFEPFFTTARKDGGTGLGMSIIYNLVTQKLHGSILLTSQPNQGVTIDIQLP 451