Pairwise Alignments

Query, 534 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 429 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  112 bits (281), Expect = 2e-29
 Identities = 87/288 (30%), Positives = 146/288 (50%), Gaps = 14/288 (4%)

Query: 250 TETLLAKNQQLEEMNTKLTLMKDKLVETEKMISIGTLAAGFAHEINNPNGALKSHLQLLQ 309
           +E L  ++  L  +N KL   +++L+++EKM++IG LAAG AHEINNP G + S+LQ LQ
Sbjct: 141 SEQLEQEHTALSLLNKKLEAAQNQLLQSEKMVAIGQLAAGVAHEINNPIGFVNSNLQSLQ 200

Query: 310 QDFNQLK--VGFEQIDILLSGSDFHGKFTQTKNALYLEESF-SGIEESLRDALHCVDRIK 366
              N+L   + F Q      GS  +    Q     Y  E   S + + +R+++  +DR+ 
Sbjct: 201 DYNNKLLKLLNFYQKLTHKIGSVPYFTLEQDMLKRYQFEFICSDLPDLIRESIEGLDRVA 260

Query: 367 TIVDKVQRCQAEPALHDSSW--VSPLSLVEQAIQICGLR---EWVVWKEQTLYPPLIYCY 421
            IV  ++       +  S W   + +  +E  ++I   +   + VV +      P +YC 
Sbjct: 261 VIVKSLKSFSH---VDSSEWQYANVIEGIENTLKIAANQIKYKAVVLRNFQDNLPELYCQ 317

Query: 422 SNDFVTALSAILNNAYQAYASDDPMIRIELSLRHDHQQLEIEVRDFGRGMSIEEKQHAFD 481
                     +L NA QA         I + +     +  I +RD G G++  + +  F+
Sbjct: 318 PMQLNQVFLNLLVNAAQAIEERG---EISIDVSASDAEFIIVIRDTGSGIAASDLRKIFE 374

Query: 482 PFFTTHDVGKGVGLGLTEAYSSIKKYDGDIQLFSELRQGTRVLITLPL 529
           PF+TT  VG G GLGL+ +YS ++K+ G+I++ S L +GT   + LP+
Sbjct: 375 PFYTTKLVGTGTGLGLSLSYSIVQKHKGEIKVSSVLGEGTAFTVILPI 422