Pairwise Alignments

Query, 534 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 96.3 bits (238), Expect = 2e-24
 Identities = 96/367 (26%), Positives = 169/367 (46%), Gaps = 51/367 (13%)

Query: 171 LLGNALTRRLTELKTATDQITFGNREVLLEIQGHDEISRVAHSFQQMVQSLRHSEATMRD 230
           LL NA +  +  +K A+    +    V+ E+ G D     A S      S   S  T+ +
Sbjct: 128 LLPNAASALIQPVKIASR--CYAIVLVINEVNGFDA---EAKSVMSNYSSFIASTLTLME 182

Query: 231 YQHQLEQWNLELEDKVNQRTETLLAKNQQLEEMNTKLTLMKDKLVETEKMISIGTLAAGF 290
           Y+H            +    +TL A+ +++E+           +    K+ +IG LAAG 
Sbjct: 183 YRH------------IAAERDTLFAQQKRIEQ----------SMARQGKLAAIGQLAAGV 220

Query: 291 AHEINNPNGALKSHL---QLLQQDFNQLKVGFEQIDILLSGSDFHGKFTQTKNALYLEES 347
           AHE+NNP G + S+L   +L  +D N   +     ++  S  +    + +      L++S
Sbjct: 221 AHELNNPLGFIYSNLNTFELYLKDINTFLM-----EVCNSHPNAIKLYNKHNLDFILKDS 275

Query: 348 FSGIEESLRDALHCVDRIKTIVDKVQRCQAEPALHDSSWVSPLSLVEQAIQICGLREWVV 407
              I ESL  A    D IK +     R  + P  +  S ++ L L+   ++I   +   V
Sbjct: 276 SELINESLAGARRARDIIKNL-----RNFSHPDENTISTINILELITDTVRIANTQ---V 327

Query: 408 WKEQTLY--PPLIYCYSNDFVTALSAIL----NNAYQAYASDDPMIRIELSLRHDHQQLE 461
            K   +     L + ++    T LS ++    NNA+ +      +I  E+S+   +  + 
Sbjct: 328 KKHARIKINHDLHHAFTQGNATQLSQVILNLINNAHHSIKHQHGLI--EISINKFNNWIN 385

Query: 462 IEVRDFGRGMSIEEKQHAFDPFFTTHDVGKGVGLGLTEAYSSIKKYDGDIQLFSELRQGT 521
           IE+ D G G+   +  H F+PFFTT ++G+G GLGL+ + + I++++G I L     +GT
Sbjct: 386 IEIEDNGCGIDDTDIPHIFEPFFTTKEIGQGTGLGLSISRAIIEQHNGCIALVHTGLKGT 445

Query: 522 RVLITLP 528
           + +I+LP
Sbjct: 446 KFVISLP 452