Pairwise Alignments

Query, 534 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 311 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 95.9 bits (237), Expect = 2e-24
 Identities = 86/297 (28%), Positives = 139/297 (46%), Gaps = 23/297 (7%)

Query: 241 ELEDKVNQRTETLLAKNQQLEEMNTKLTLMKDKLVETEKMISIGTLAAGFAHEINNPNGA 300
           E+E  +   T  L  KN  L++    +   +  +++ EK+ S+GT+AAG AHEINNP   
Sbjct: 21  EVEQLLEDSTRQLYEKNVLLQQQIDLIKQQQQSMIQQEKLASLGTVAAGVAHEINNPLAY 80

Query: 301 LKSHLQLLQQDFNQLKVGFEQIDILLSGSDFHGKFTQTKNALYLEESFSGIEESLRDALH 360
           + S+++ L        + + Q D+L S  +   +        +++E    + E   D   
Sbjct: 81  ILSNVRSL--------ISYAQ-DLLASMDEGDKQQIDQAKLQFIKED---LPELASDTCQ 128

Query: 361 CVDRIKTIVDKVQRCQAEPALHDSSWVSPLSLVEQA-IQICGLREW---VVWKEQTLYPP 416
            + RIK IV+ +       A  DS+  S + LV+     +  LR     V+ K++  + P
Sbjct: 129 GLMRIKDIVNHLLFF----ARTDSTGKSVIQLVDALEFSLKLLRPMLNNVLIKKEISHVP 184

Query: 417 LIYCYSNDFVTALSAILNNAYQA--YASDDPMIRIELSLRHDHQQLEIEVRDFGRGMSIE 474
           +I     +    L  I+ NAYQA    SD P   I L L      + + V D G GM   
Sbjct: 185 MILFNVGELNQVLMNIIVNAYQACDVVSDRPS-EIRLKLTQSDTNICLTVVDNGCGMDEY 243

Query: 475 EKQHAFDPFFTTHDVGKGVGLGLTEAYSSIKKYDGDIQLFSELRQGTRVLITLPLAP 531
                FD F+TT  VG G G+G++     ++++D  I++ SE   GT V+I  P+ P
Sbjct: 244 TLGRMFDAFYTTKPVGTGTGVGMSIVLQILRQHDCTIEVKSEPDNGTEVMILFPIDP 300