Pairwise Alignments

Query, 534 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 764 a.a., sensory box histidine kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 84.7 bits (208), Expect = 1e-20
 Identities = 80/284 (28%), Positives = 124/284 (43%), Gaps = 33/284 (11%)

Query: 270 MKDKLVETEKMISIGTLAAGFAHEINNPNGALKSHLQLLQQDFNQLKVGFEQIDILLSGS 329
           +++ +V+TEKM+S+G LAAG AHEINNP G +    Q + +  +       +     SG 
Sbjct: 490 IEEIMVQTEKMLSVGGLAAGMAHEINNPLGGILQGAQNIMRRIDPTLPANRKA-AEESGC 548

Query: 330 DFHGKFTQTKNALYLEESFSGIEESLRDALHCVDRIKTIVDKVQRCQAEPALHDSSW--V 387
           D     T   +         GI   L        R  +IV  +          DS W  V
Sbjct: 549 DLENLHTYMTSR--------GIIRFLEGIRESGQRAASIVSNMLEFSRSS---DSRWSRV 597

Query: 388 SPLSLVEQAIQICG----------LREWVVWKEQTLYPPLIYCYSNDFVTALSAILNNAY 437
           +   LVE+ +++             R   + ++     P + C   +    L  +  NA 
Sbjct: 598 AIPHLVERTLELAANDYDLKKKYDFRHIEIVQDFAPDLPEVLCMPTEIEQVLLNLFKNAA 657

Query: 438 QAYA-----SDDPMIRIELSLRHDHQQLEIEVRDFGRGMSIEEKQHAFDPFFTTHDVGKG 492
           QA       +D P I +  +L  D  ++ ++V D G GM  + ++  F+PF+TT +VG+G
Sbjct: 658 QAMPERGQRADAPRITVRGALEGD--RIRLDVADNGPGMVEDVRRRVFEPFYTTKNVGEG 715

Query: 493 VGLGLTEAYSSI-KKYDGDIQLFSELRQGTRVLITLPLA-PNKP 534
            GLGL+ +Y  I   + G   + SE   GT   I LPL  P  P
Sbjct: 716 TGLGLSVSYFIITTNHGGSFSVQSEPGSGTMFSIRLPLTQPGMP 759



 Score = 34.7 bits (78), Expect = 1e-05
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 20/230 (8%)

Query: 11  VALIEALLLTILITFTLSYLESTNYDGLQKRAQTTIALFATMVKNPVLAYDLASIDSAAT 70
           V L+ A+++ +  +  L  L     + ++++A         ++  P+  +D  +++    
Sbjct: 19  VTLVAAVVVALSSSLYLQ-LSQDMLEDIERKADEYSTRLTDILSIPMWNFDARTLEQIGA 77

Query: 71  LMMSNQDIVYVAVENPHGKLLTFKGNRDLFEAYHTINDQDFSKLQSIYPITDVIEVSGTL 130
           +      +  +++ +  G+ L      D         D D + ++        +   G +
Sbjct: 78  VFAQYDLVNELSIRDVQGRTLFMLRKAD---------DPDATIMRQ-----HDVHFEGEV 123

Query: 131 FGTVFIGFDLSYLEQQLAHARKWTLLIVLGEMGLVALFS---YLLGNALTRRLTELKTAT 187
            G V + F L      L    K    IV   + +V LF+    LL   L R L  L+T  
Sbjct: 124 IGHVSMAFTLKAYRASLRDLAKAAAAIV--GVVVVVLFTATGILLRVLLRRPLDALQTGM 181

Query: 188 DQITFGNREVLLEIQGHDEISRVAHSFQQMVQSLRHSEATMRDYQHQLEQ 237
           D+I  G+    +    H E+S +A +F +M   +   E  +     +L+Q
Sbjct: 182 DRIAQGDFSYDVRSIPHVELSHIAENFARMAHEVELRERELHAINDRLQQ 231