Pairwise Alignments

Query, 534 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1119 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

 Score =  140 bits (352), Expect = 3e-37
 Identities = 90/260 (34%), Positives = 144/260 (55%), Gaps = 26/260 (10%)

Query: 1   MSIRLKTMLGVALIEALLLTILITFTLSYLESTNYDGLQKRAQTTIALFATMVKNPVLAY 60
           MS RLKT+LG+ALIE LLL +L+  +++YL+ +N   ++KRA+TT+ LF+   ++ V++ 
Sbjct: 1   MSFRLKTILGIALIEGLLLFLLVYTSINYLKLSNQSQIEKRAETTLTLFSVAAQDAVISN 60

Query: 61  DLASIDSAATLMMSNQDIVYVAVENPHGKLLTFKGNRDLFEAYHTINDQDFSKLQSIYPI 120
           DLA++ S    ++S+ +++YV V +   ++L + G     +  H  +         I+ +
Sbjct: 61  DLATLHSLIQELLSHSEVLYVTVSD-QSRILAYGGADKYIQVSHQADKHLDQVKDGIFDL 119

Query: 121 TDVIEVSGTLFGTVFIGFDLSYLEQQLAHARKWTLLIVLGEMGLVALFSYLLGNALTRRL 180
              IEV+G LFG V +GF+   LE  +    +  L I   EM LVALFS LLG+ LTR L
Sbjct: 120 EYPIEVNGYLFGKVNMGFETQSLENLVNTVTQQILSIAGVEMLLVALFSLLLGHYLTRNL 179

Query: 181 TELKTATDQITFGNREVLLEIQGHDEISRVAHSFQQMVQSLRHSEATMRDYQHQLEQWNL 240
           T+L +A+ +I  G   V + ++G DEI+++  +F  MV                      
Sbjct: 180 TQLTSASKRILAGEIGVRVPVKGKDEIAQMTRAFNNMV---------------------- 217

Query: 241 ELEDKVNQRTETLLAKNQQL 260
              DKV+ RT+ L A N +L
Sbjct: 218 ---DKVDARTKALEAANIRL 234



 Score = 47.4 bits (111), Expect = 3e-09
 Identities = 69/269 (25%), Positives = 105/269 (39%), Gaps = 47/269 (17%)

Query: 266 KLTLMKDKLVETEKMISIGTLAAGFAHEINNPNGALKSHLQLLQQDFNQLKVGFEQIDIL 325
           KL   K++  +  K+ S     A  +HEI +P  A+   ++LL             +D  
Sbjct: 483 KLQQAKEQAEQGSKVKS--RFLATMSHEIRSPLNAILGGVELL-------------LDSS 527

Query: 326 LSGSDFHGKFTQTKNALYLEESFSGIEESLRDALHCVDRIKTIVDKVQRCQAEPALHDSS 385
           LS         Q  +A    E+ S +  ++ D L              + +A   + +S 
Sbjct: 528 LSKD-------QRIHANIAREAGSALLHTINDILD-----------FSKIEAGQMVLESH 569

Query: 386 WVSPLSLVEQAIQICGLREWVVWKEQTLY-----PPLIYCYSNDFVTALSAILNNAYQAY 440
              P  LV Q +QI   + +    E   +     P  +          L  +++NA +  
Sbjct: 570 EFEPDKLVAQVLQILEPKAFEKGLELVSFVNRNVPRTVVGDQQRLRQVLHNLVDNAIKFT 629

Query: 441 ASDDPMIRIELSLRHDHQ---QLEIEVRDFGRGMSIEEKQHAFDPFFTTHDVG----KGV 493
           AS    I +E+ +  +HQ   QL   V D G G+S E +   F  F   HD      KG 
Sbjct: 630 ASGT--ITVEMWIPDNHQTEVQLYCRVTDSGIGISAEAQSKLFKEFSQVHDTHNTNYKGT 687

Query: 494 GLGLTEAYSSIKKYDGDIQLFSELRQGTR 522
           GLGL      I    G I+L SEL QG+R
Sbjct: 688 GLGLAICSELITMMGGTIELQSELGQGSR 716