Pairwise Alignments

Query, 536 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 624 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Pseudomonas fluorescens FW300-N2E2

 Score =  114 bits (285), Expect = 1e-29
 Identities = 77/242 (31%), Positives = 123/242 (50%), Gaps = 3/242 (1%)

Query: 290 LQLGHFCAFYQPQKHIDSGGVVAFEALARRVIGKGLYEMPDRFFPILEKYHLIPTLTEVM 349
           LQ   F   YQP+  + SG VV  EAL R          P  F P+ E   LI  L++ +
Sbjct: 374 LQRKEFVLHYQPKLDLKSGKVVGVEALVRWNRPDHGLVYPSDFIPVAEDSGLIVPLSQWV 433

Query: 350 VRDILTFLMTEDAV-LQDITIGVNIPGKMLTDGSFYRLLLSVAEEKQAQHALHRLSVEIT 408
           +++         A  ++ + + VN+         F   +    +E     A  +L +EIT
Sbjct: 434 LQEACQQACRWQAQGMRPLYLSVNVSAIDFRQRGFVEGIARTLKETGL--APTQLELEIT 491

Query: 409 EHDLIADFDAAKHEIYKLKSLGIRCALDDFGTGYSGYEYLCEIPFDVVKIDGRYIQSLGK 468
           E  L+ + D     +  +K LGIR A+DDFGTGYS   YL + P DV+KID  ++  L  
Sbjct: 492 ESVLMQNVDTTVAILKAIKQLGIRLAIDDFGTGYSSLSYLQKFPVDVLKIDQSFVGDLSI 551

Query: 469 AESSTVILQSMISSIKSLSMQVIAEWVDSDQQYQILQEMGCDLVQGYLVSPAISPQQVLN 528
             +   ++ ++IS  KSL++ +IAE V++ +Q + L++  C+ VQGY  S A+ PQ   +
Sbjct: 552 DSNDAKLVSTIISLGKSLNLHIIAEGVETLEQLEFLKKHHCEEVQGYYFSKAVEPQAFAD 611

Query: 529 YL 530
           ++
Sbjct: 612 WM 613



 Score = 33.9 bits (76), Expect = 2e-05
 Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 31/138 (22%)

Query: 3   SNREILLVDDEPAVLNALKRELRPYFP-----------------------HLHTATCAQE 39
           +NR IL+VDD PA+    ++ L P                           + +A   +E
Sbjct: 8   ANRRILVVDDTPAIHQDFRKILSPSAGSDDSLDDTESLLFGTPQVSRLQFQIDSAYQGEE 67

Query: 40  ALELLKQ-----HPVQMVISDYRM-PGMNGADLVIEINRRYPHIMSLILSGQADMN--GL 91
           ALEL+K+      P  +V +D RM PG +G   +  +    P +   + +  +D +   +
Sbjct: 68  ALELVKRAQAEGQPYALVFADMRMPPGWDGLQTIERLWEADPRLQIALCTAFSDYSWETM 127

Query: 92  SRALNEGDLYKFLLKPWE 109
           S  +   D    L KP++
Sbjct: 128 SERIEFDDQLLILKKPFD 145