Pairwise Alignments

Query, 536 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 950 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  126 bits (316), Expect = 4e-33
 Identities = 84/243 (34%), Positives = 126/243 (51%), Gaps = 5/243 (2%)

Query: 290 LQLGHFCAFYQPQKHIDSGGVVAFEALAR-RVIGKGLYEMPDRFFPILEKYHLIPTLTEV 348
           L++G    FYQP+  +    + A EAL R R    GL   P +F P+ E+  LI  L E 
Sbjct: 710 LEVGQLEVFYQPRLSLADDSLEAAEALVRWRHPELGLVA-PAQFIPLAEETGLIIPLGEF 768

Query: 349 MVRDILTFLMT-EDAVLQDITIGVNIPGKMLTDGSFYRLLLSVAEEKQAQHALHRLSVEI 407
           ++R+        +   L  I + VN+  K L  G+F  L+  V EE      +  L +E+
Sbjct: 769 VLREACRQARQWQQDGLAAIRVSVNLSVKQLRQGNFVSLVRQVLEETGLPATM--LELEL 826

Query: 408 TEHDLIADFDAAKHEIYKLKSLGIRCALDDFGTGYSGYEYLCEIPFDVVKIDGRYIQSLG 467
           TE  L+ D D A     +L++LG++ A+DDFGTG+S   YL   P D VKID  +I  L 
Sbjct: 827 TESQLLDDIDNAISISEQLRALGVKLAIDDFGTGFSSLSYLKRFPVDYVKIDRSFISELE 886

Query: 468 KAESSTVILQSMISSIKSLSMQVIAEWVDSDQQYQILQEMGCDLVQGYLVSPAISPQQVL 527
            +     I +++I+ + SL  +V+AE V++  Q   L+   CD +QGYL+SP +   Q  
Sbjct: 887 HSSQDAAITRAIIAMVHSLERKVVAEGVETQAQMDFLKANHCDEIQGYLLSPPVPALQFA 946

Query: 528 NYL 530
             L
Sbjct: 947 ELL 949