Pairwise Alignments

Query, 536 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 703 a.a., diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  115 bits (289), Expect = 4e-30
 Identities = 72/242 (29%), Positives = 127/242 (52%), Gaps = 3/242 (1%)

Query: 285 NIYRDLQLGHFCAFYQPQKHIDSGGVVAFEALARRVIGKGLYEMPDRFFPILEKYHLIPT 344
           N+    +   F   YQPQ  + SG +  FE L R   G      P  F P+LE+  LI  
Sbjct: 454 NLRSATERNDFELLYQPQVMLASGKLRGFEGLLRWPQGDVGENEPGVFIPLLEETRLIER 513

Query: 345 LTEVMVRDILT-FLMTEDAVLQDITIGVNIPGKMLTDGSFYRLLLSVAEEKQAQHALHRL 403
           + + ++R+ +  +     +   D+ + +N+     +    +  L  + +E Q   A  +L
Sbjct: 514 VGDWVLREGMNQYGQWLPSFGSDLILSLNVSPVQFSRAGLFDSLRRLLDEYQLDPA--QL 571

Query: 404 SVEITEHDLIADFDAAKHEIYKLKSLGIRCALDDFGTGYSGYEYLCEIPFDVVKIDGRYI 463
            +E+TE  L+ D + +  ++ +L+ LG+R A+DDFGTGYS   YL     D +KID  +I
Sbjct: 572 ELEVTEGTLMQDLEQSCDKLRQLRKLGVRVAIDDFGTGYSSLAYLRHFELDTLKIDRLFI 631

Query: 464 QSLGKAESSTVILQSMISSIKSLSMQVIAEWVDSDQQYQILQEMGCDLVQGYLVSPAISP 523
            ++  +     ++ ++I   ++L ++V+AE V++  Q   L   GCD++QG+LVSPA+  
Sbjct: 632 ANMMDSPRDAAVVSTIIDLGRNLELEVVAEGVETVAQRDWLIANGCDVMQGFLVSPAVPA 691

Query: 524 QQ 525
           +Q
Sbjct: 692 EQ 693



 Score = 43.5 bits (101), Expect = 3e-08
 Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 6/135 (4%)

Query: 4   NREILLVDDEPAVLNALKRELRPYFPHLHTATCAQEALELLKQHPVQMVISDYRMPGMNG 63
           +R +L+VDD  A L A++  L      +HT    + AL+ L    V++V+ D +MPGM+G
Sbjct: 11  SRTLLVVDDREANLVAMEALLGDGDWQVHTVNSGEAALKALLDLDVELVLLDVQMPGMDG 70

Query: 64  ADLVIEINRRYPHI----MSLILSGQADMNGLSRALNEGDLYKFLLKPWERNYLLQTILQ 119
            + V  + R  PH     +  + +     + + R    G +  F+LKP++   L   I  
Sbjct: 71  FE-VARLMRGSPHTRYTPIIFVSAIAHTRDSVLRGYATGAV-DFILKPFDPQVLKHKINT 128

Query: 120 CFSEKERREEFDTVS 134
             + +  R +   ++
Sbjct: 129 LLAHEHNRRDLQLLT 143