Pairwise Alignments

Query, 536 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 929 a.a., response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) from Synechococcus elongatus PCC 7942

 Score =  115 bits (289), Expect = 6e-30
 Identities = 79/263 (30%), Positives = 133/263 (50%), Gaps = 11/263 (4%)

Query: 275 DETLEIKQLLNIYRDLQLG----HFCAFYQPQKHIDSGGVVAFEALARRVIGKGLYEMPD 330
           D  L +++ +++  +LQ       F  ++QP+    SG V+  EAL R    +  +  P 
Sbjct: 662 DLNLRLRERVHLRNELQKAIETEAFELYFQPKIEGCSGQVIGLEALLRWQHPQMGFISPA 721

Query: 331 RFFPILEKYHLIPTLTEVMVRDILTFLMTEDAVLQDI---TIGVNIPGKMLTDGSFYRLL 387
            F PI E    I  L++ ++      L   D + Q I   ++ VNI        +F + +
Sbjct: 722 TFVPIAEDTGQIIPLSQWVLETACRQL--RDLLQQGIAAPSVAVNISTVQFRRINFVKSV 779

Query: 388 LSVAEEKQAQHALHRLSVEITEHDLIADFDAAKHEIYKLKSLGIRCALDDFGTGYSGYEY 447
            S  ++ Q +     L +EITE+ L  + + A  ++ +LK LG+  ++DDFGTG+S   Y
Sbjct: 780 QSALQKYQLKS--EHLEIEITENVLFDNTEKAIEKLQRLKELGVNISIDDFGTGFSSLSY 837

Query: 448 LCEIPFDVVKIDGRYIQSLGKAESSTVILQSMISSIKSLSMQVIAEWVDSDQQYQILQEM 507
           L E+P D VKID  ++Q +        I Q +IS    L + V+AE V+++QQ++ LQ+ 
Sbjct: 838 LKELPIDTVKIDRSFVQEINTDSRDAAITQGIISMAHHLRLNVVAEGVETEQQFKFLQQS 897

Query: 508 GCDLVQGYLVSPAISPQQVLNYL 530
            CD  QGY  +  +  + +  YL
Sbjct: 898 NCDQYQGYYFAKPMPFEALKQYL 920



 Score = 26.9 bits (58), Expect = 0.003
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 7  ILLVDDEP---AVLNALKRELRPYFPHLHTATCAQEALELLKQHPVQMVISDYRMPGMNG 63
          +LLVDD+     +   L R+ +     L   +  QEAL  + +    + + DYR+   +G
Sbjct: 10 LLLVDDDEDDFIITRDLLRDAQQAQIQLDWCSDFQEALATMGRQEHDVYLVDYRLGAESG 69

Query: 64 ADLVIEINRRYPHIMSLILSGQAD 87
           DL+ +  +       ++L+GQ +
Sbjct: 70 LDLIDQAIQAGITRPIILLTGQGN 93



 Score = 25.4 bits (54), Expect = 0.010
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query: 486 LSMQVIAEWVDSDQQYQILQEMGCDLVQGYLVSPAISPQQVLNYLH 531
           LS++ IAE   S+QQ ++L+E       G ++  AI P   + Y++
Sbjct: 354 LSLRDIAERKASEQQLRLLKESLEASFNGVVIVDAIEPDMPVIYVN 399