Pairwise Alignments

Query, 536 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1301 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and Response Regulator Receiver modulation (NCBI) from Rhodospirillum rubrum S1H

 Score =  115 bits (289), Expect = 8e-30
 Identities = 77/242 (31%), Positives = 123/242 (50%), Gaps = 3/242 (1%)

Query: 290  LQLGHFCAFYQPQKHIDSGGVVAFEALARRVIGKGLYEMPDRFFPILEKYHLIPTLTEVM 349
            L+ G F   YQP   + +G V   EAL R   G GL   PDRF P+ E   LI  L E +
Sbjct: 1059 LEQGDFLLHYQPLIALGTGEVEGVEALVRWAGGDGLLIPPDRFIPLAEDTGLIVPLGEWV 1118

Query: 350  VRDILTFLMTEDAVLQDITI-GVNIPGKMLTDGSFYRLLLSVAEEKQAQHALHRLSVEIT 408
            + +    +    +    +T+  VN+  +   D +   L+  V E+     ++  L +EIT
Sbjct: 1119 LGEACRTMQRWRSQGMPLTVLAVNLSPRQFRDHAIPALVRRVLEQTGLPASV--LELEIT 1176

Query: 409  EHDLIADFDAAKHEIYKLKSLGIRCALDDFGTGYSGYEYLCEIPFDVVKIDGRYIQSLGK 468
            E  ++    AA+ ++  LK LG+R A+DDFGTGYS    L   P D +KID  +++ + +
Sbjct: 1177 ESAIMEQGAAAEAQMTGLKHLGVRLAIDDFGTGYSSLANLRRFPIDKIKIDQSFVRDIPR 1236

Query: 469  AESSTVILQSMISSIKSLSMQVIAEWVDSDQQYQILQEMGCDLVQGYLVSPAISPQQVLN 528
              ++  I  ++I+  ++L + V+AE V++  Q   L    CD  QGYL S  I+   +  
Sbjct: 1237 DAAAEEITATIIAMGRTLKLHVLAEGVETTDQLDFLSRKQCDSAQGYLFSRPITAAALEK 1296

Query: 529  YL 530
            +L
Sbjct: 1297 WL 1298



 Score = 36.6 bits (83), Expect = 6e-06
 Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 4/124 (3%)

Query: 7   ILLVDDEPAVLNALKRELRPYFPHLHTATCAQEALELLKQHPVQMVISDYRMPGMNGADL 66
           +L+V+D P  +NA   E+      + +A   QE LE   +    ++ISD  MP M+G  +
Sbjct: 498 VLVVEDNPD-MNAFVSEIVAGHYRVISAFDGQEGLEKAHETLPDLIISDVMMPRMSGETM 556

Query: 67  VIEINR--RYPHIMSLILSGQADMNGLSRALNEGDLYKFLLKPWERNYLLQTILQCFSEK 124
              + +      I  ++L+ +AD    +R L  G +  +L KP+ R  LL       ++ 
Sbjct: 557 ADTLRQDGLTSDIPIIMLTAKADEAMRARML-RGVVQDYLFKPFSRLELLARADGLIADH 615

Query: 125 ERRE 128
            R++
Sbjct: 616 RRKQ 619