Pairwise Alignments

Query, 536 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 816 a.a., response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  115 bits (289), Expect = 5e-30
 Identities = 76/235 (32%), Positives = 121/235 (51%), Gaps = 5/235 (2%)

Query: 298 FYQPQKHIDSGGVVAFEALARRVIGKGLYEMPDRFFPILEKYHLIPTLTEVMVRDILTFL 357
           +YQP+  + +  ++  EALAR     G    P  F P+ E+  LI  L E++++      
Sbjct: 584 YYQPKVDLKTKEIIGAEALARLYDPSGKLISPLDFIPLAEETGLIHQLGEIILKQSCMAA 643

Query: 358 MTEDAVLQDITIGVNIPGKMLTDGSFYRLLLSVAEEKQAQHALHRLSVEITEHDLIADFD 417
                  + + I VNI  K  T+  F   +  V E      +   L +E+TE  L+ DFD
Sbjct: 644 KAWQKRGRPLQIAVNIAAKQFTNPEFCDSVAKVLELTGLDSSF--LELEVTESSLMYDFD 701

Query: 418 AAKHEIYKLKSLGIRCALDDFGTGYSGYEYLCEIPFDVVKIDGRYIQSLGKAESSTVILQ 477
            A + +  L SLG+  A+DDFGTGYS   YL   P + +KID  +++ +   E S  I++
Sbjct: 702 EALNVLNTLSSLGLSIAIDDFGTGYSSLSYLKFFPVNTLKIDQSFVKDMLGDEQSLDIVK 761

Query: 478 SMISSIKSLSMQVIAEWVDSDQQYQILQEMGCDLVQGYLVS---PAISPQQVLNY 529
           ++I   KSL +++IAE ++  +Q Q L  + C+  QGY+ S   P     Q+LN+
Sbjct: 762 AVIHLAKSLKLKLIAEGIEDAEQLQKLVALECEQGQGYMFSKPLPLKEFDQLLNH 816



 Score = 43.9 bits (102), Expect = 2e-08
 Identities = 38/156 (24%), Positives = 79/156 (50%), Gaps = 22/156 (14%)

Query: 1   MQSNREILLVDDEPAVLNALKRELRPYFPHLHTATCAQEALELLKQHPVQMVISDYRMPG 60
           +++ ++IL+VDDE A L+ L++ L      +  +T  Q+AL+  +QH   +++ D  MP 
Sbjct: 7   VETRQKILVVDDESANLHLLEQSLTD-LAEIICSTGGQDALDKAEQHQPAIILLDIEMPQ 65

Query: 61  MNGADLV--IEINRRYPHIMSLILSGQADMNGLSRALNEGDLYKFLLKPWE--------R 110
           MNG ++   ++ N +  +   + ++  ++ +   ++L+ G +  F+ KP +        +
Sbjct: 66  MNGFEMCKRLKNNPKTCNSAVIFVTAHSESSFEYKSLSSGGI-DFIHKPIDLATCRLRVK 124

Query: 111 NYLLQTILQCFSEKERREEFDTVSGLKTWQALNKQI 146
           N+LL           +R+E   +   +  QAL  QI
Sbjct: 125 NHLLL----------KRQEQTIIEARQDMQALVNQI 150