Pairwise Alignments

Query, 536 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1094 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  126 bits (317), Expect = 4e-33
 Identities = 81/227 (35%), Positives = 127/227 (55%), Gaps = 5/227 (2%)

Query: 295  FCAFYQPQKHIDSGGVVAFEALAR-RVIGKGLYEMPDRFFPILEKYHLIPTLTEVMVRDI 353
            FC  YQP     SG  VA EAL R R   +GL   PD F PI E+  LI  + E +++  
Sbjct: 846  FCLHYQPIVDTSSGEGVALEALLRWRHPQRGLVP-PDEFIPIAEETGLIEPIGEWVIQQA 904

Query: 354  LTFLMTEDAVLQDITIGVNIPGKMLTDG--SFYRLLLSVAEEKQAQHALHRLSVEITEHD 411
            L  L    +    I + +N+ G+ L  G  S +  +L+   +K    A   + +EITE  
Sbjct: 905  LRDLRQCHSQGIMINMAINVSGRQLAHGDPSHFACMLNGLLQKY-DVAPQYVHIEITESI 963

Query: 412  LIADFDAAKHEIYKLKSLGIRCALDDFGTGYSGYEYLCEIPFDVVKIDGRYIQSLGKAES 471
            L+AD + +   +  ++ LG+   LDDFGTGYS   YL + P  V+KID  ++ ++ +  +
Sbjct: 964  LMADTELSLKALTAIRHLGVEIYLDDFGTGYSSLSYLKQFPISVIKIDKSFVDNMLEDRA 1023

Query: 472  STVILQSMISSIKSLSMQVIAEWVDSDQQYQILQEMGCDLVQGYLVS 518
               +++++I+  +SL M+++AE V+S+ Q   LQ +GCD VQGYLV+
Sbjct: 1024 DANLIKAIITMGQSLDMRLVAEGVESEPQRSFLQGLGCDFVQGYLVA 1070