Pairwise Alignments

Query, 536 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 879 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  111 bits (277), Expect = 1e-28
 Identities = 76/236 (32%), Positives = 118/236 (50%), Gaps = 5/236 (2%)

Query: 288 RDLQLGHFCAFYQPQKHIDSGGVVAFEALAR-RVIGKGLYEMPDRFFPILEKYHLIPTLT 346
           R +  G    +YQPQ ++ +G ++  EAL R +   KGL  MP  F  + E+  LI  L 
Sbjct: 487 RAIDQGELVVYYQPQVNLRNGAIIGAEALVRWQDPEKGLV-MPGSFIALAEETGLIVPLG 545

Query: 347 EVMVRDILTFLMT-EDAVLQDITIGVNIPGKMLTDGSFYRLLLSVAEEKQAQHALHRLSV 405
           E ++R   +     +DA L  I + VN+  +         L   +  +     A + L +
Sbjct: 546 EWVLRTACSQNKAWQDAGLPKIPVAVNLSARQFAAQDVVELAARILHDTGL--APNYLEL 603

Query: 406 EITEHDLIADFDAAKHEIYKLKSLGIRCALDDFGTGYSGYEYLCEIPFDVVKIDGRYIQS 465
           E+TE  ++AD +A      KLK L I  ++DDFGTG+S   YL     D +KID  +++ 
Sbjct: 604 ELTESAVMADAEAFIRATEKLKGLSIALSIDDFGTGFSSLSYLKRFAIDRLKIDQTFVRD 663

Query: 466 LGKAESSTVILQSMISSIKSLSMQVIAEWVDSDQQYQILQEMGCDLVQGYLVSPAI 521
           +     S  I  ++IS   SL +  IAE V+++ Q   L+   CD +QGY  SPA+
Sbjct: 664 ITHDPDSASIALAIISLAHSLKLLAIAEGVETEAQLNFLRARNCDEMQGYFFSPAL 719



 Score =  109 bits (273), Expect = 4e-28
 Identities = 55/124 (44%), Positives = 80/124 (64%)

Query: 5   REILLVDDEPAVLNALKRELRPYFPHLHTATCAQEALELLKQHPVQMVISDYRMPGMNGA 64
           R +LLVDDEP +L+ALKR  R     + TA   +E L++L  H V ++ISD RMP M+GA
Sbjct: 745 RTLLLVDDEPGILSALKRLFRREGYVILTANSGKEGLDILAGHDVGVIISDARMPEMDGA 804

Query: 65  DLVIEINRRYPHIMSLILSGQADMNGLSRALNEGDLYKFLLKPWERNYLLQTILQCFSEK 124
           + + ++   YP  M +ILSG  D+  ++ A+N G+L+KFL KPW+   LL+TI   F + 
Sbjct: 805 EFLGKVRAMYPDTMRIILSGYTDLKAVTSAVNRGELFKFLTKPWDDGELLETIRDAFRQY 864

Query: 125 ERRE 128
           E R+
Sbjct: 865 EMRK 868