Pairwise Alignments

Query, 536 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 715 a.a., response regulator/sensory box/GGDEF domain/EAL domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  115 bits (287), Expect = 7e-30
 Identities = 73/250 (29%), Positives = 122/250 (48%), Gaps = 3/250 (1%)

Query: 285 NIYRDLQLGHFCAFYQPQKHIDSGGVVAFEALARRVIGKGLYEMPDRFFPILEKYHLIPT 344
           N+ + L+ G F   YQP+  I +G V   EAL R V   G    P  F P+ EK  LI  
Sbjct: 467 NLRKALERGEFVLHYQPKVDIRTGAVTGMEALVRWVRDDGTIVPPQDFIPVAEKTGLIVA 526

Query: 345 LTEVMVRDILTFLMTEDAVLQDITIGVNIPGKMLTDGSFYRLLLSVAEEKQAQHALHRLS 404
           L E ++R+    +         + + VNI  +    G    +  ++A+   A      L 
Sbjct: 527 LGEFVLREACRQMHAWQKRFGRLKMAVNISARQFQPGLPDTVASALAD---AGLDPGLLE 583

Query: 405 VEITEHDLIADFDAAKHEIYKLKSLGIRCALDDFGTGYSGYEYLCEIPFDVVKIDGRYIQ 464
           +EITE  ++ D       + +L + GI  A+DDFGTG+S   YL   P   +KID  +++
Sbjct: 584 LEITETTMMRDLALTVSVLERLTTGGIAVAIDDFGTGHSSLYYLKTFPISSIKIDRSFVR 643

Query: 465 SLGKAESSTVILQSMISSIKSLSMQVIAEWVDSDQQYQILQEMGCDLVQGYLVSPAISPQ 524
            +   E+   I+ +++S  ++L + ++AE V+++ Q   L+ + C  VQGY  S  + P 
Sbjct: 644 DIPNDETDATIVTTVVSMGRNLGIGIVAEGVETEAQLDFLRSLECPEVQGYYFSKPLPPH 703

Query: 525 QVLNYLHNKL 534
               ++ N+L
Sbjct: 704 AFEAWMENRL 713



 Score = 37.7 bits (86), Expect = 1e-06
 Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 11/168 (6%)

Query: 3   SNREILLVDDEPAVLNALKRELRPYFPHLHTATCAQEALELLKQHPVQMVISDYRMPGMN 62
           S   IL +DD+ A    L   L      +  A   +  L++ +     +++ D RMP M 
Sbjct: 4   SPARILCIDDDDADRMNLVAYLEDSGYIVLEAANGRAGLDVFRAEHPDLILVDLRMPVMG 63

Query: 63  GADLVIEINRRYPHIMSLILSGQADMNGLSRALNEGDLYKFLLKPWERNYLLQTILQCFS 122
           G ++V  +    P +  +++SG   +     AL  G  + ++ KP     +L+  +    
Sbjct: 64  GMEVVAHMREEAPGVPVIVVSGAGILEEAVEALRRG-AWDYVTKPVLDMRVLEHAVMKAL 122

Query: 123 EKER----------REEFDTVSGLKTWQALNKQISLLQSLADHPYLVL 160
           E+ R          R EF+  +  +  +  N+Q+   QS  +   L L
Sbjct: 123 ERARLLDERQRYQERLEFEVEARTRELRVSNEQLRSTQSELEDKSLFL 170