Pairwise Alignments

Query, 434 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 984 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  110 bits (274), Expect = 3e-28
 Identities = 85/260 (32%), Positives = 133/260 (51%), Gaps = 39/260 (15%)

Query: 184 EKLASLGKLAAGVAHEINNPLGFVMSNFSFLNEYVAQIRQHPQIQPIADPRLHEMIADSE 243
           E+LAS+G+LAAGVAHEI NP+             +A + Q+ + +   D  + E+ A   
Sbjct: 752 ERLASIGRLAAGVAHEIGNPI-----------TGIACLAQNLRDEREDDGEIVEISA--- 797

Query: 244 AILMESLEGLSRIKNIVSSLNVYSHTHENMAE---IDMRDVLSSALALI-IGDLKYRAQF 299
               + +E   R+  IV SL  ++H  E   +   + +  V   A+ L+ +   +   QF
Sbjct: 798 ----QIIEQTKRVSRIVQSLMSFAHAGERQHQLYPVSLAQVTQDAIGLLSLNRNRTEVQF 853

Query: 300 VYPAPEKPYYIRGSYNKLQQVFINLIINAVQSVSATQEGVVRL--ELCEVRWPGEGIPRV 357
           +       +   G   +L QV INL+ NA  +  + Q GV+R+  E+ E          V
Sbjct: 854 INLC-HPDHVAEGDPQRLAQVLINLLSNARDA--SPQGGVIRISSEVAE--------QTV 902

Query: 358 QVLIEDNGKGISAEHLEKVFDPFFTTKKVGDGAGLGLSVAREIIEEHHGKIKLCSTEGV- 416
            +++ED G GI  +  +++F+PFFTTK  G+G GLGL++   IIEEH+G+I + S     
Sbjct: 903 YLVVEDEGSGIPKDIQDRLFEPFFTTKDPGEGTGLGLALVYSIIEEHYGQIDIDSPADPE 962

Query: 417 ---GTRVFVTLPQAVRAQGA 433
              GTR  +TLP+ V A  A
Sbjct: 963 TQRGTRFRITLPRHVEASHA 982