Pairwise Alignments

Query, 434 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 997 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score = 98.2 bits (243), Expect = 1e-24
 Identities = 70/262 (26%), Positives = 123/262 (46%), Gaps = 22/262 (8%)

Query: 168 LQFRKTVIDKHQVQQEEKLASLGKLAAGVAHEINNPLGFVMSNFSFLNEYVAQIRQHPQI 227
           L   + V  +  +QQ  K+ +LG L  G+AH+ NN L  V+ +   L       R  P  
Sbjct: 610 LDISERVATEQTLQQLHKMEALGNLTGGIAHDFNNLLMAVLGSLELLRR-----RMPP-- 662

Query: 228 QPIADPRLHEMIADSEAILMESLEGLSRIKNIVSSLNVYSHTHE-NMAEIDMRDVLSSAL 286
               DP L  ++ ++ A       G  R  ++ + +  ++   E +   ID+  ++    
Sbjct: 663 ----DPALLRLVDNARA-------GAERGASLTARMLSFARKQELHKTAIDLPVLIEDMR 711

Query: 287 ALIIGDLKYRAQFVYPAPEKPYYIRGSYNKLQQVFINLIINAVQSVSATQEGVVRLELCE 346
           AL++  L    Q     P +   ++   N+L+   +NL  NA  +++     ++  E C 
Sbjct: 712 ALLLSSLGPTIQLEVELPPQLARVKTDPNQLETALLNLAANARDAMAGEGRILITAEECA 771

Query: 347 VRWPGEGIP---RVQVLIEDNGKGISAEHLEKVFDPFFTTKKVGDGAGLGLSVAREIIEE 403
           +     G+P    V + + D+G G+    L++  +PFFTTK VG G GLGLS+   + E+
Sbjct: 772 LTSEQNGLPIGRYVCLALSDSGTGMDEVTLKRAVEPFFTTKGVGKGTGLGLSMVHGLAEQ 831

Query: 404 HHGKIKLCSTEGVGTRVFVTLP 425
             G++ L S+ G+GT   + LP
Sbjct: 832 SGGRLMLQSSPGLGTTAEIWLP 853