Pairwise Alignments

Query, 434 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 671 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  105 bits (261), Expect = 6e-27
 Identities = 80/261 (30%), Positives = 135/261 (51%), Gaps = 22/261 (8%)

Query: 182 QEEKLASLGKLAAGVAHEINNPLGFVMSNFSFLNEYVA----QIRQHPQIQPIADPRLHE 237
           Q EK+ S+G LAAG+AHEINNPLG ++ N   +   ++    + R+  +   +    +++
Sbjct: 406 QSEKMLSVGSLAAGMAHEINNPLGAILHNAQNIRRRLSPELERNREAAEETGVRLEAVNQ 465

Query: 238 MIADSEAILMESLEGL----SRIKNIVSSLNVYSH-THENMAEIDMRDVLSSALALIIGD 292
            +   E  + + L+G+    SR   IVS +  +S  ++  +A+  +  ++  AL +   D
Sbjct: 466 YLQRRE--VPQLLDGIQQAGSRAAKIVSHMLSFSRMSNRQLADCHLPVLIDQALEIAGND 523

Query: 293 LKYRAQFVYPAPE-------KPYYIRGSYNKLQQVFINLIINAVQSVSATQEGVVRLELC 345
                 F + A +       +   +    N+L+QV +NL+ NA Q++ A Q G     + 
Sbjct: 524 FALMEGFDFKAIDIVRDFDPRVDRVPCIGNELEQVLLNLLKNAAQAIHAHQVGEPGQIIL 583

Query: 346 EVRWPGEGIPRVQVLIEDNGKGISAEHLEKVFDPFFTTKKVGDGAGLGLSVAREII-EEH 404
             R      P  ++ +EDNG GI     +++F+PFFTTK+VG G GLGLSV+  II   H
Sbjct: 584 RTRL---NPPWAEIQVEDNGGGIPENVRKRIFEPFFTTKEVGQGTGLGLSVSYFIITNNH 640

Query: 405 HGKIKLCSTEGVGTRVFVTLP 425
            G++++    G GT   + LP
Sbjct: 641 QGQMEVQCQPGHGTTFTLRLP 661