Pairwise Alignments

Query, 434 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 900 a.a., PAS domain S-box protein from Rhodopseudomonas palustris CGA009

 Score = 98.6 bits (244), Expect = 7e-25
 Identities = 77/280 (27%), Positives = 130/280 (46%), Gaps = 15/280 (5%)

Query: 158 DVTKSALYSMLQFRKTVIDKHQVQQEEKLASLGKLAAGVAHEINNPLGFVMSNFSFLNEY 217
           D  ++AL ++ + ++++I+       EKLA+LG+L AGVAHE+NNP+G  ++  S L   
Sbjct: 624 DAAEAALRNLRETQQSLIEA------EKLAALGRLVAGVAHEVNNPVGISLTVASALERK 677

Query: 218 VAQIRQHPQIQPIADPRLHEMIADSEAILMESLEGLSRIKNIVSSLN--VYSHTHENMAE 275
            A          +   RL+E +  +     + +  L+R   ++ S         + +   
Sbjct: 678 AAVFATEVARGELKRSRLNEFLETTRDASSQLVANLNRAAELIQSFKQVAADRNYSDQRL 737

Query: 276 IDMRDVLSSALALIIGDLKYRAQFVYPAPEKPYYIRGSY-NKLQQVFINLIINAVQSVSA 334
            D+ D+    +  +   L+ +         +P  +  SY     QV  NL +N+V    A
Sbjct: 738 FDLGDLTEQVVMSLRPGLR-KHNLTLNVECQPCLMMNSYPGPYGQVLTNLFLNSV--AHA 794

Query: 335 TQEGVVRLELCEVRWPGEGIPRVQVLIEDNGKGISAEHLEKVFDPFFTTKKVGDGAGLGL 394
              G  R    E+     G   V V   D+G G+S +   + FDPFFTT++   G GLGL
Sbjct: 795 FPNG--RAGTVEIEVRAAGNDHVVVAYSDDGCGMSLDVRRRAFDPFFTTRRDQGGTGLGL 852

Query: 395 SVAREIIEEH-HGKIKLCSTEGVGTRVFVTLPQAVRAQGA 433
            +   I+     G+++L S  G GTR+ +TLP+    + A
Sbjct: 853 HIVYNIVTNRLGGRLELDSEPGNGTRILMTLPRTAPQERA 892