Pairwise Alignments

Query, 434 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 709 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  101 bits (252), Expect = 7e-26
 Identities = 78/270 (28%), Positives = 133/270 (49%), Gaps = 37/270 (13%)

Query: 160 TKSALYSMLQFRKTVIDKHQVQQE----EKLASLGKLAAGVAHEINNPLGFVMSNFSFLN 215
           T+S     L+ ++ V   ++ +Q+    EKL +LG+L AG+AHEINNP   ++ N   L 
Sbjct: 435 TRSLQDKTLELQRNVALLNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELLR 494

Query: 216 EYVAQIRQHPQIQPIADPRLHEMIADSEAILMES---LEGLSRIKNIVSSLNVYSHTHEN 272
                               +E+   +E +  E    ++ + RI  I+ SL  YS   E 
Sbjct: 495 --------------------YELGDKAEVVKEEIDLVIQQVGRISTIIRSLLQYSRPGEF 534

Query: 273 MAEIDMRDV---LSSALALIIGDLKYRAQFVYPAPEKPYYIRGSYNKLQQVFINLIINAV 329
            A ++M  +   +   L L+   ++ +   +         ++ +  +L QV INL++NA 
Sbjct: 535 NAPLEMHPITPIIEEMLVLVRHSIQKQEVVLITELNASCPVQVNRPQLLQVLINLVVNAA 594

Query: 330 QSVSATQEGVVRLELCEVRWPGEGIP-RVQVLIEDNGKGISAEHLEKVFDPFFTTKKVGD 388
            ++    +G  R+ +    W  + I   V++ +ED G GI  E L ++FDPF+TT+K  D
Sbjct: 595 HAM----DGKGRIWVRTYDWVQQDIAIGVKIEVEDEGSGIEPEQLGRIFDPFYTTRK--D 648

Query: 389 GAGLGLSVAREIIEEHHGKIKLCSTEGVGT 418
           G GLGLS++  II+   G I++ S  G G+
Sbjct: 649 GTGLGLSLSYGIIKRIGGTIEVSSVLGKGS 678