Pairwise Alignments

Query, 434 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 429 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  141 bits (356), Expect = 3e-38
 Identities = 89/274 (32%), Positives = 144/274 (52%), Gaps = 27/274 (9%)

Query: 171 RKTVIDKHQVQQEEKLASLGKLAAGVAHEINNPLGFVMSNFSFLNEY------------- 217
           +K    ++Q+ Q EK+ ++G+LAAGVAHEINNP+GFV SN   L +Y             
Sbjct: 156 KKLEAAQNQLLQSEKMVAIGQLAAGVAHEINNPIGFVNSNLQSLQDYNNKLLKLLNFYQK 215

Query: 218 ----VAQIRQHPQIQPIADPRLHEMI-ADSEAILMESLEGLSRIKNIVSSLNVYSHTHEN 272
               +  +      Q +      E I +D   ++ ES+EGL R+  IV SL  +SH   +
Sbjct: 216 LTHKIGSVPYFTLEQDMLKRYQFEFICSDLPDLIRESIEGLDRVAVIVKSLKSFSHVDSS 275

Query: 273 MAEI-DMRDVLSSALALIIGDLKYRAQFVYPAPEKPYYIRGSYNKLQQVFINLIINAVQS 331
             +  ++ + + + L +    +KY+A  +    +    +     +L QVF+NL++NA Q+
Sbjct: 276 EWQYANVIEGIENTLKIAANQIKYKAVVLRNFQDNLPELYCQPMQLNQVFLNLLVNAAQA 335

Query: 332 VSATQEGVVRLELCEVRWPGEGIPRVQVLIEDNGKGISAEHLEKVFDPFFTTKKVGDGAG 391
           +    E  + +   +  +         ++I D G GI+A  L K+F+PF+TTK VG G G
Sbjct: 336 IEERGEISIDVSASDAEFI--------IVIRDTGSGIAASDLRKIFEPFYTTKLVGTGTG 387

Query: 392 LGLSVAREIIEEHHGKIKLCSTEGVGTRVFVTLP 425
           LGLS++  I+++H G+IK+ S  G GT   V LP
Sbjct: 388 LGLSLSYSIVQKHKGEIKVSSVLGEGTAFTVILP 421