Pairwise Alignments

Query, 434 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  155 bits (392), Expect = 2e-42
 Identities = 117/439 (26%), Positives = 211/439 (48%), Gaps = 51/439 (11%)

Query: 25  LLAFIKVLFSNVKPKRKFDSLMTTIS-DLVPGCQIALL-ERQSDEHWRIIQTSGLTVETR 82
           +L  +K   +N +    F SL   I+ +L P  Q+ +    ++D  + +  T  + +   
Sbjct: 31  MLKTLKAFTNNKEQSTPFRSLFELIAQELKPVVQLLITCNHENDSFYIVSSTDEMLIGRH 90

Query: 83  FKTALPPFIEDEWYCMP------------NVQAEMVWREHYAHCFPDCQSALAAKFHTAE 130
           F+      ++D     P            N+     W        P+  SAL      A 
Sbjct: 91  FQ------LDDTVNSKPEQSIFSQSTVFFNLNLTPKWPASLKGLLPNAASALIQPVKIAS 144

Query: 131 NHYLLLIMQPMLDGFNHSQRDELYALFDVTKSALYSMLQFRKTVIDK-----------HQ 179
             Y ++++   ++GF+   +  +        S L +++++R    ++             
Sbjct: 145 RCYAIVLVINEVNGFDAEAKSVMSNYSSFIASTL-TLMEYRHIAAERDTLFAQQKRIEQS 203

Query: 180 VQQEEKLASLGKLAAGVAHEINNPLGFVMSNFSFLNEYVAQIR--------QHPQ-IQPI 230
           + ++ KLA++G+LAAGVAHE+NNPLGF+ SN +    Y+  I          HP  I+  
Sbjct: 204 MARQGKLAAIGQLAAGVAHELNNPLGFIYSNLNTFELYLKDINTFLMEVCNSHPNAIKLY 263

Query: 231 ADPRLHEMIADSEAILMESLEGLSRIKNIVSSLNVYSHTHEN-MAEIDMRDVLSSALALI 289
               L  ++ DS  ++ ESL G  R ++I+ +L  +SH  EN ++ I++ ++++  + + 
Sbjct: 264 NKHNLDFILKDSSELINESLAGARRARDIIKNLRNFSHPDENTISTINILELITDTVRIA 323

Query: 290 IGDLKYRAQFVYPAPEKPYYIRGSYNKLQQVFINLIINAVQSVSATQEGVVRLELCEVR- 348
              +K  A+          + +G+  +L QV +NLI NA  S+   Q G++ + + +   
Sbjct: 324 NTQVKKHARIKINHDLHHAFTQGNATQLSQVILNLINNAHHSIKH-QHGLIEISINKFNN 382

Query: 349 WPGEGIPRVQVLIEDNGKGISAEHLEKVFDPFFTTKKVGDGAGLGLSVAREIIEEHHGKI 408
           W       + + IEDNG GI    +  +F+PFFTTK++G G GLGLS++R IIE+H+G I
Sbjct: 383 W-------INIEIEDNGCGIDDTDIPHIFEPFFTTKEIGQGTGLGLSISRAIIEQHNGCI 435

Query: 409 KLCSTEGVGTRVFVTLPQA 427
            L  T   GT+  ++LP++
Sbjct: 436 ALVHTGLKGTKFVISLPES 454