Pairwise Alignments

Query, 434 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 311 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  118 bits (296), Expect = 2e-31
 Identities = 90/290 (31%), Positives = 147/290 (50%), Gaps = 25/290 (8%)

Query: 150 RDELYALFDVTKSALYSMLQFRKTVID--KHQVQ---QEEKLASLGKLAAGVAHEINNPL 204
           R E+  L + +   LY      +  ID  K Q Q   Q+EKLASLG +AAGVAHEINNPL
Sbjct: 19  RQEVEQLLEDSTRQLYEKNVLLQQQIDLIKQQQQSMIQQEKLASLGTVAAGVAHEINNPL 78

Query: 205 GFVMSNFSFLNEYVAQI---RQHPQIQPIADPRLHEMIADSEAILMESLEGLSRIKNIVS 261
            +++SN   L  Y   +         Q I   +L  +  D   +  ++ +GL RIK+IV+
Sbjct: 79  AYILSNVRSLISYAQDLLASMDEGDKQQIDQAKLQFIKEDLPELASDTCQGLMRIKDIVN 138

Query: 262 SLNVYSHTHEN-MAEIDMRDVLSSALALI---IGDLKYRAQFVYPAPEKPYYIRGSYNKL 317
            L  ++ T     + I + D L  +L L+   + ++  + +  +        I  +  +L
Sbjct: 139 HLLFFARTDSTGKSVIQLVDALEFSLKLLRPMLNNVLIKKEISHVP-----MILFNVGEL 193

Query: 318 QQVFINLIINAVQS--VSATQEGVVRLELCEVRWPGEGIPRVQVLIEDNGKGISAEHLEK 375
            QV +N+I+NA Q+  V + +   +RL+L +          + + + DNG G+    L +
Sbjct: 194 NQVLMNIIVNAYQACDVVSDRPSEIRLKLTQ------SDTNICLTVVDNGCGMDEYTLGR 247

Query: 376 VFDPFFTTKKVGDGAGLGLSVAREIIEEHHGKIKLCSTEGVGTRVFVTLP 425
           +FD F+TTK VG G G+G+S+  +I+ +H   I++ S    GT V +  P
Sbjct: 248 MFDAFYTTKPVGTGTGVGMSIVLQILRQHDCTIEVKSEPDNGTEVMILFP 297