Pairwise Alignments

Query, 439 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 928 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  137 bits (344), Expect = 2e-36
 Identities = 115/451 (25%), Positives = 192/451 (42%), Gaps = 63/451 (13%)

Query: 1   MAKSRLLLSELLDQLSFALCIVRNDYVIVKV-NEYFESRVIFDGETMQGKNILELFPESA 59
           +++ R  L  L DQ    + I       +K+ N  F   V      + G+   ++FP+  
Sbjct: 278 LSEERTHLQRLFDQAPGFIAITEGPQHQLKIANRAFHQLV--GARELLGRPAFKVFPQLE 335

Query: 60  DYLKRKIDTALVIESSSFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIE 119
                ++   + +    +   +    + P        G+ E+ Y N    P+  ED  + 
Sbjct: 336 SRALSELLQQVYVTGRPYIGRDIAVRVRP-----QAGGKAERRYVNFIFQPVFREDEQVS 390

Query: 120 HVCLCVYDVTIQASQQQELKRVSQKLEEEHQSQKVLIKKLEDAQGQLIQSEKMASIGQLS 179
            +    +DVT Q   QQEL+R S++L+E  + +    ++LE ++  L QS+K+ +IG+L+
Sbjct: 391 GIFCQGHDVTAQVLAQQELQRSSERLQELVEERT---RELELSRQALYQSQKLEAIGKLT 447

Query: 180 AGIAHEINNPVGFITSNLQTLSDYFNSLEKVLKSITQTIGQSKDTALNEACQKILKQGQV 239
            G+AH+ NN +  I  NLQ L    +      K +                         
Sbjct: 448 GGVAHDFNNVLQVIAGNLQLLQPLVDDNRTAAKRV------------------------- 482

Query: 240 DFILEDTAELITESLEGSSRVMSIVKNLKEFSHVDRSEWSYANLENCIESTLKIINNEIK 299
                D A    E      R   + + L  F+          NL   +    +++   + 
Sbjct: 483 -----DAAGSAVE------RGAKLARQLLAFARRQPLRPQPTNLGRLLRDLDELLRQALG 531

Query: 300 YNITLEKHYAANVPDVFCQPMQINQVLLNILVNASHAIKGEGTITITLQSAGDD------ 353
             I +E   A  +      P Q+ QV+LN+ +NA  A+   G +T+ L ++  D      
Sbjct: 532 ERIEIETVVAGGLWTTMVDPNQLEQVVLNLAINARDAMPDGGKLTLELGNSMLDEHYAET 591

Query: 354 --------FVEIHIRDTGCGIPEEIRERIFEPFFTTKPVGSGTGLGLSVSYGIINKHNGT 405
                   +V + + DTG G+P EI E+ FEPFF+TKP G GTGLGLS++YG   +  G 
Sbjct: 592 QSDVTPGQYVLLAVSDTGVGMPAEIIEQAFEPFFSTKPEGHGTGLGLSMAYGFAKQSGGH 651

Query: 406 ISVTSEVGKGSEFTIRLP--VNPSAEAVDNT 434
           I + SE G G+   + LP    P  +A  +T
Sbjct: 652 IRLYSEEGTGTTVKLYLPRTEQPEVQAQPST 682