Pairwise Alignments

Query, 439 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 853 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  122 bits (306), Expect = 4e-32
 Identities = 99/416 (23%), Positives = 175/416 (42%), Gaps = 69/416 (16%)

Query: 32  NEYFESRVIFDGETMQGKNILELFPESADYLKRKIDTALVIESSSFSSWEQKPHLLPFKS 91
           N Y+        E + GK   E+  E   Y +R+++    +     +     PH      
Sbjct: 339 NRYYTEWFGHSTEWLLGKTAREVLGERG-YAERQVNIRAALAGQDVTFEAYSPHR----- 392

Query: 92  SRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQQELKRVSQKLEEEHQS 151
                G+  +M   +  +P       +    +   DVT +   +Q L+ +++ LE   Q 
Sbjct: 393 ----DGQPRRML--VHYLPRRDCHANVLGFFVMALDVTERWRAEQALRELNETLESRIQE 446

Query: 152 Q--------KVLIKKL---EDAQGQLIQSEKMASIGQLSAGIAHEINNPVGFITSNLQTL 200
           +        + L+K++   E AQ  L Q++KM ++GQL+ GIAH+ NN +  I   L  +
Sbjct: 447 RTQALAEVYERLLKEMASREQAQEALRQAQKMEAVGQLTGGIAHDFNNMLTGIIGGLDLI 506

Query: 201 SDYFNSLEKVLKSITQTIGQSKDTALNEACQKILKQGQVDFILEDTAELITESLEGSSRV 260
             Y  S                                      +T   I  ++  ++R 
Sbjct: 507 QRYIQSGRH----------------------------------GETQRFIDAAVTSANRA 532

Query: 261 MSIVKNLKEFSHVDRSEWSYANLENCIESTLKIINNEIKYNITLEKHYAANVPDVFCQPM 320
            ++   L  F+           L   IES   +++  +  +I ++      +  V     
Sbjct: 533 AALTHRLLAFARRQPLNLKRVELNQLIESMHDLLSRTLGRHIHIDNRLQQGLWPVSSDEN 592

Query: 321 QINQVLLNILVNASHAIKGEGTI-----TITLQSAGD-------DFVEIHIRDTGCGIPE 368
           Q+   LLN+++NA  A+   G++      + L S G+        +V + + D+GCG+  
Sbjct: 593 QLESALLNLVINARDAMPDGGSLLLETRNVELYSQGEVGDLAAGRYVILRLTDSGCGMSA 652

Query: 369 EIRERIFEPFFTTKPVGSGTGLGLSVSYGIINKHNGTISVTSEVGKGSEFTIRLPV 424
           ++   +FEPFFTTKP+G GTGLGLS+ YG   +  G I + SE G+G++ ++ LPV
Sbjct: 653 KVLASVFEPFFTTKPIGQGTGLGLSMVYGFTRQAGGHIQIASEPGEGTQVSLYLPV 708