Pairwise Alignments

Query, 439 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 671 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  157 bits (396), Expect = 1e-42
 Identities = 103/277 (37%), Positives = 149/277 (53%), Gaps = 26/277 (9%)

Query: 166 LIQSEKMASIGQLSAGIAHEINNPVGFITSNLQTLSDYFNSLEKVLKSITQTIGQSKDTA 225
           ++QSEKM S+G L+AG+AHEINNP+G I  N Q      N   ++   + +    +++T 
Sbjct: 404 MVQSEKMLSVGSLAAGMAHEINNPLGAILHNAQ------NIRRRLSPELERNREAAEETG 457

Query: 226 LN-EACQKILKQGQVDFILEDTAELITESLEGSSRVMSIVKNLKEFSHVDRSEWSYANLE 284
           +  EA  + L++ +V  +L+   +         SR   IV ++  FS +   + +  +L 
Sbjct: 458 VRLEAVNQYLQRREVPQLLDGIQQ-------AGSRAAKIVSHMLSFSRMSNRQLADCHLP 510

Query: 285 NCIESTLKIINNEIKYN-------ITLEKHYAANVPDVFCQPMQINQVLLNILVNASHAI 337
             I+  L+I  N+           I + + +   V  V C   ++ QVLLN+L NA+ AI
Sbjct: 511 VLIDQALEIAGNDFALMEGFDFKAIDIVRDFDPRVDRVPCIGNELEQVLLNLLKNAAQAI 570

Query: 338 K----GEGTITITLQSAGDDFVEIHIRDTGCGIPEEIRERIFEPFFTTKPVGSGTGLGLS 393
                GE    I        + EI + D G GIPE +R+RIFEPFFTTK VG GTGLGLS
Sbjct: 571 HAHQVGEPGQIILRTRLNPPWAEIQVEDNGGGIPENVRKRIFEPFFTTKEVGQGTGLGLS 630

Query: 394 VSYGII-NKHNGTISVTSEVGKGSEFTIRLPVNPSAE 429
           VSY II N H G + V  + G G+ FT+RLP+N  AE
Sbjct: 631 VSYFIITNNHQGQMEVQCQPGHGTTFTLRLPLNSPAE 667