Pairwise Alignments

Query, 439 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 709 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  130 bits (326), Expect = 2e-34
 Identities = 96/303 (31%), Positives = 156/303 (51%), Gaps = 48/303 (15%)

Query: 130 IQASQQQELKRVSQK---LEEEHQSQKVLIKKLEDAQGQLIQSEKMASIGQLSAGIAHEI 186
           IQA+ +Q   +V ++   L+++    +  +  L + + QL+ +EK+ ++G+L+AGIAHEI
Sbjct: 420 IQAAAEQLEMKVEERTRSLQDKTLELQRNVALLNETRQQLVTNEKLTALGELTAGIAHEI 479

Query: 187 NNPVGFITSNLQTLSDYFNSLEKVLKSITQTIGQSKDTALNEACQKILKQGQVDFILEDT 246
           NNP   I  N++ L        +V+K                         ++D +++  
Sbjct: 480 NNPTAVILGNMELLRYELGDKAEVVKE------------------------EIDLVIQQV 515

Query: 247 AELITESLEGSSRVMSIVKNLKEFSHVDR--SEWSYANLENCIESTLKIINNEI-KYNIT 303
                       R+ +I+++L ++S      +      +   IE  L ++ + I K  + 
Sbjct: 516 G-----------RISTIIRSLLQYSRPGEFNAPLEMHPITPIIEEMLVLVRHSIQKQEVV 564

Query: 304 LEKHYAANVPDVFCQPMQINQVLLNILVNASHAIKGEGTITI-TLQSAGDDF---VEIHI 359
           L     A+ P    +P Q+ QVL+N++VNA+HA+ G+G I + T      D    V+I +
Sbjct: 565 LITELNASCPVQVNRP-QLLQVLINLVVNAAHAMDGKGRIWVRTYDWVQQDIAIGVKIEV 623

Query: 360 RDTGCGIPEEIRERIFEPFFTTKPVGSGTGLGLSVSYGIINKHNGTISVTSEVGKGSEFT 419
            D G GI  E   RIF+PF+TT+    GTGLGLS+SYGII +  GTI V+S +GKGS FT
Sbjct: 624 EDEGSGIEPEQLGRIFDPFYTTRK--DGTGLGLSLSYGIIKRIGGTIEVSSVLGKGSIFT 681

Query: 420 IRL 422
           I L
Sbjct: 682 IGL 684