Pairwise Alignments

Query, 439 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 429 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  403 bits (1036), Expect = e-117
 Identities = 210/421 (49%), Positives = 289/421 (68%), Gaps = 7/421 (1%)

Query: 7   LLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPESADYLKRKI 66
           LL +L  +L   +C+V   Y I+  NE+F  R+       Q  N+L LFPE+A +L++KI
Sbjct: 6   LLQKLASRLPLGVCVVDEHYQIIYWNEFFTDRLPTAKSDTQENNLLTLFPEAAKFLQKKI 65

Query: 67  DTALVIESSSFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVY 126
           ++  V+ ++SFS WE +PH+  F SSRP++GEE  MYQN+E  P+  ED  ++ VCL V 
Sbjct: 66  NSVFVLNNASFSYWEHRPHVFDFSSSRPITGEETAMYQNIEFFPLDIEDHQVKTVCLIVQ 125

Query: 127 DVTIQASQQQELKRVSQKLEEEHQSQKVLIKKLEDAQGQLIQSEKMASIGQLSAGIAHEI 186
           DVT  AS  Q  K +S++LE+EH +  +L KKLE AQ QL+QSEKM +IGQL+AG+AHEI
Sbjct: 126 DVTELASYYQAQKCLSEQLEQEHTALSLLNKKLEAAQNQLLQSEKMVAIGQLAAGVAHEI 185

Query: 187 NNPVGFITSNLQTLSDYFNSLEKVL---KSITQTIGQSKDTALNEACQKILKQGQVDFIL 243
           NNP+GF+ SNLQ+L DY N L K+L   + +T  IG      L    Q +LK+ Q +FI 
Sbjct: 186 NNPIGFVNSNLQSLQDYNNKLLKLLNFYQKLTHKIGSVPYFTLE---QDMLKRYQFEFIC 242

Query: 244 EDTAELITESLEGSSRVMSIVKNLKEFSHVDRSEWSYANLENCIESTLKIINNEIKYNIT 303
            D  +LI ES+EG  RV  IVK+LK FSHVD SEW YAN+   IE+TLKI  N+IKY   
Sbjct: 243 SDLPDLIRESIEGLDRVAVIVKSLKSFSHVDSSEWQYANVIEGIENTLKIAANQIKYKAV 302

Query: 304 LEKHYAANVPDVFCQPMQINQVLLNILVNASHAIKGEGTITITLQSAGDDFVEIHIRDTG 363
           + +++  N+P+++CQPMQ+NQV LN+LVNA+ AI+  G I+I + ++  +F+ I IRDTG
Sbjct: 303 VLRNFQDNLPELYCQPMQLNQVFLNLLVNAAQAIEERGEISIDVSASDAEFI-IVIRDTG 361

Query: 364 CGIPEEIRERIFEPFFTTKPVGSGTGLGLSVSYGIINKHNGTISVTSEVGKGSEFTIRLP 423
            GI      +IFEPF+TTK VG+GTGLGLS+SY I+ KH G I V+S +G+G+ FT+ LP
Sbjct: 362 SGIAASDLRKIFEPFYTTKLVGTGTGLGLSLSYSIVQKHKGEIKVSSVLGEGTAFTVILP 421

Query: 424 V 424
           +
Sbjct: 422 I 422