Pairwise Alignments

Query, 439 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 311 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  160 bits (405), Expect = 5e-44
 Identities = 98/297 (32%), Positives = 169/297 (56%), Gaps = 20/297 (6%)

Query: 135 QQELKRVSQKLEEEHQSQKVLIKKLEDAQGQLIQSEKMASIGQLSAGIAHEINNPVGFIT 194
           +Q L+  +++L E++   +  I  ++  Q  +IQ EK+AS+G ++AG+AHEINNP+ +I 
Sbjct: 23  EQLLEDSTRQLYEKNVLLQQQIDLIKQQQQSMIQQEKLASLGTVAAGVAHEINNPLAYIL 82

Query: 195 SNLQTLSDYFNSLEKVLKSITQTIGQSKDTALNEACQKILKQGQVDFILEDTAELITESL 254
           SN+++L  Y   L                 +++E  ++ + Q ++ FI ED  EL +++ 
Sbjct: 83  SNVRSLISYAQDLL---------------ASMDEGDKQQIDQAKLQFIKEDLPELASDTC 127

Query: 255 EGSSRVMSIVKNLKEFSHVDRSEWSYANLENCIESTLKIINNEIKYNITLEKHYAANVPD 314
           +G  R+  IV +L  F+  D +  S   L + +E +LK++   +  N  L K   ++VP 
Sbjct: 128 QGLMRIKDIVNHLLFFARTDSTGKSVIQLVDALEFSLKLLRPML--NNVLIKKEISHVPM 185

Query: 315 VFCQPMQINQVLLNILVNASHA--IKGEGTITITLQ-SAGDDFVEIHIRDTGCGIPEEIR 371
           +     ++NQVL+NI+VNA  A  +  +    I L+ +  D  + + + D GCG+ E   
Sbjct: 186 ILFNVGELNQVLMNIIVNAYQACDVVSDRPSEIRLKLTQSDTNICLTVVDNGCGMDEYTL 245

Query: 372 ERIFEPFFTTKPVGSGTGLGLSVSYGIINKHNGTISVTSEVGKGSEFTIRLPVNPSA 428
            R+F+ F+TTKPVG+GTG+G+S+   I+ +H+ TI V SE   G+E  I  P++P A
Sbjct: 246 GRMFDAFYTTKPVGTGTGVGMSIVLQILRQHDCTIEVKSEPDNGTEVMILFPIDPQA 302