Pairwise Alignments

Query, 380 a.a., response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  202 bits (513), Expect = 2e-56
 Identities = 123/347 (35%), Positives = 196/347 (56%), Gaps = 19/347 (5%)

Query: 8   VVCVDDDDFMLKALGRMIRRMRPDWEIELVEDANHWVVDVEHAPSV--VISDLLMPGKNG 65
           V+ VDDD FML+AL R+ +R+RP+W+    ED  +W   + H  ++  ++ D LMP  NG
Sbjct: 4   VLFVDDDSFMLRALLRLAKRLRPEWQFWTEEDGLNWAKSIPHNVNIDLIVCDYLMPDING 63

Query: 66  EALLTELRARCPETMRVLLTGDTTQELPRKAHTYAQFVLPKPFTHEDFEHLFLCVERLYR 125
           +++L E     P  +R LLTGDTT+E+  KA   A FVL KPF  +D   L  C+ER+++
Sbjct: 64  DSVLIEASKHFPLAIRALLTGDTTEEVVCKAGKAAHFVLSKPFNEQDIVQLLTCIERIHK 123

Query: 126 MPFNIECRKRLGALEEIPILPNSVRKLQQVIASPNCSMDAIAETIVHEPVLVAKIIQIAN 185
           +PF  E R  LGA   +  LP+ V+++++V+         I + I HEP++ AK++Q+AN
Sbjct: 124 LPFTHEVRAMLGASALLLPLPDIVQRVRKVLQDEQSEPTDIVDLIAHEPLITAKLLQLAN 183

Query: 186 SSYFGFRRNTDSLHEAVARLGAVLVESIAISLLAIHPS--NVNSAEDHQWVADCAFKSSS 243
           S++ GF R T S+ EA+ RLG  L+ +I IS +AI  S  ++        + + A++ + 
Sbjct: 184 SAFLGFSRATLSIEEAIIRLGVDLISAI-ISSIAIEQSATSIIDKSAQLRINEYAYQLAL 242

Query: 244 IARALVRELGFPRQDQDRIFVANLLTSIGKILLLEDGASKKEFLDYYHLQPGYADCD--- 300
            A+ +   L   +  Q+ +F+A L++ IG++++     S + + D +  Q  +AD     
Sbjct: 243 NAQKIANTLSLQKSKQEELFIAALMSVIGELIV-----SSRIWQDLFAAQ--FADWPTRK 295

Query: 301 ---VISAYILIMWGYDIDIGDIILNQRLTSFSGEHLEQLGSLSCLAN 344
               ISAY+L +WGY   + DIIL+      S      L  L CLAN
Sbjct: 296 LIVAISAYLLTLWGYSEFLCDIILSSVEPEVSYTD-HNLALLLCLAN 341