Pairwise Alignments

Query, 411 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 420 a.a., transporter, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  556 bits (1434), Expect = e-163
 Identities = 282/409 (68%), Positives = 337/409 (82%), Gaps = 10/409 (2%)

Query: 4   LSQLNAHVRQYMLVTFNYWNFTLTDGALRMLVVLYFYDLGYSSLAIASLFLFYEFFGVVT 63
           L QL A VRQY+L+TFNYW+FTLTDGALRMLVVL+F+ LGYS LAIA LFLFYE FGVVT
Sbjct: 10  LMQLPAAVRQYLLITFNYWSFTLTDGALRMLVVLHFHQLGYSPLAIAMLFLFYEIFGVVT 69

Query: 64  NLIGGWLGARLGLNRTMNIGLGLQIIALLMLAVPAS----WLT-IPWVMAAQALSGIAKD 118
           NL+GG+LGARLGLNRTMN+GLG+Q+ AL ML VPA+    WL  +PWVMAAQALSG+AKD
Sbjct: 70  NLLGGYLGARLGLNRTMNMGLGMQVFALAMLLVPAASLPLWLAGVPWVMAAQALSGVAKD 129

Query: 119 LNKMSAKSAIKTLVPENAQGALFKWIAILTGSKNALKGAGFFLGGALLSLIGFQYAVAAM 178
           LNKMSAKSAIK LVP+  QG L++W+A+LTGSKNALKGAGFFLGG LL+L GF+ A+A M
Sbjct: 130 LNKMSAKSAIKLLVPKGEQGKLYQWVALLTGSKNALKGAGFFLGGMLLALFGFELAIAMM 189

Query: 179 AAVLVLVFIGSVMSLKSDLGKAKNKPKFSDIFSKSASVNILSAARLFLFGARDVWFVIAL 238
           A++L LV++ SV+ LK DLGKAKN+PKF++IFSKS SVNILSAARLFLF ARD WFV+AL
Sbjct: 190 ASLLGLVWLLSVVMLKKDLGKAKNQPKFTEIFSKSRSVNILSAARLFLFAARDAWFVVAL 249

Query: 239 PIYLGSVFGWDHSAVGGFLALWVIGYGVIQGFAPKITGSKSE-----HPPAGRAAIGWAL 293
           P+YL S F WDH AVGGFLALWVIGYG++Q  APKITG++ +       P G +A+ WA 
Sbjct: 250 PVYLASKFAWDHWAVGGFLALWVIGYGIVQTLAPKITGNQHQGLGVGAAPDGCSALIWAS 309

Query: 294 ALSLVTGLIAYGVQIQWHPEVVIIGGLMLFGAVFAVNSSLHSYLIVSYAKDDGVSLDVGF 353
            L+ V  LIA  +Q  ++PE  ++ GLMLFG +FAVNSSLHSYLIVSYA +D VSLDVGF
Sbjct: 310 ILAFVPALIACAMQFSFYPEASLLLGLMLFGVLFAVNSSLHSYLIVSYASEDAVSLDVGF 369

Query: 354 YYMANAMGRLIGTILSGWVFQLWGLAACLWVSFGFLVLTTLISFWLPNR 402
           YYMANAMGRL+GT+LSG V+Q +GLAACLW+S  F+ +T +IS  LP +
Sbjct: 370 YYMANAMGRLVGTVLSGLVYQAYGLAACLWISSIFIGITAVISIKLPRQ 418