Pairwise Alignments

Query, 693 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 937 a.a., extracellular solute-binding proteins, family 3/GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 89.7 bits (221), Expect = 6e-22
 Identities = 94/424 (22%), Positives = 191/424 (45%), Gaps = 54/424 (12%)

Query: 288 GSVRGISADVVFQACEMLLLKCELVSNGQETWESMFDDLQDKSIDILAPITVSQQRKNLA 347
           G   GI++D++    E L LK + ++   + W+S+   L+   I +   I  +  R+   
Sbjct: 520 GQFAGINSDIINMLSEQLGLKIQPIAF--DDWQSLIGALRAGDIALAGSIAQTADRQRHI 577

Query: 348 YFSESYY-HPQAILVKREHYKDDVYSNVSELVAERIGVIKDDFFEELLQQMLPNKILFSY 406
            FS+ Y+  P  ++ + E        N+++L  +R+ V++       L  + P+  L   
Sbjct: 578 VFSDPYWPSPWGVVSQLEQVS---VFNLAQLAGQRVAVVEGYHLVTQLMTLQPSLKLVLV 634

Query: 407 ASQEEKVQALLNKEVDYIVLNRANFNLLLRESTEMLPIVEDTMIGSFYQYDIAIGFAKNP 466
            + +  + A+   + D  +         L+  T    +++ +++      D    F  NP
Sbjct: 635 PNTQSGLLAVTEGKADVFIDKVVTLASELK--TGQYSLLKMSLLSDLA--DQHSHFGLNP 690

Query: 467 LGATLAPLFSRAIKMLNTEQIIHTYDYQPNWRATLLA--EKKYQRSTQWL-FAMAFIVLF 523
             ++LAPL +R +  ++ ++    Y +   W +  +A  + +Y R  ++L F    + LF
Sbjct: 691 QFSSLAPLINRVLAQIDQQKQQQIYSH---WVSFTIATDDGQYLRWIRYLLFGALGLSLF 747

Query: 524 MVAFYL--------------------HGISHTDNLTKLRNRRALYNRYRRGL------SP 557
           MV   +                    H  SH D LT+L NR  L +R  + L        
Sbjct: 748 MVVVLVVNRRLKREITRRIAAEKRLQHVASH-DVLTQLPNRGLLDDRLSQALLSHRRDQS 806

Query: 558 RLSLVYLDVNTFKSINDQYGHEVGDKVLKQLAQRIEAVWRGRS--YRIGGDEFILI---- 611
             +L+++D++ FK +NDQ+GH +GD +L ++A  +    R      R GGDEF+++    
Sbjct: 807 HFALLFIDLDGFKQVNDQHGHPIGDALLLRVAGLLTQAIRHSDTVARFGGDEFVILLNRV 866

Query: 612 --GECSAKRLEHVVAQCERFMFVDAERDVSFEVSVAIGIAKNRERTESLNEVMHQADIAM 669
              + + +  ++++        ++    V+ E++V+IG+       ++  E++ +AD  M
Sbjct: 867 QDLDAATQVADNILHSLSSPFTIEG---VTVEIAVSIGVVIYPRDGDTAIELLKKADQLM 923

Query: 670 YRAK 673
           Y+AK
Sbjct: 924 YQAK 927



 Score = 31.6 bits (70), Expect = 2e-04
 Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 9/153 (5%)

Query: 85  FNDILVAIETGNADFAANITYTDLRAQRFDFSRPTNIEYTYLYSYGGLR----LPEL--R 138
           +N+ L  ++ G A     +  T  R QRFDF+       TYLY +  L+    + EL   
Sbjct: 76  WNESLAQLQQGKAQVHIGMGKTPEREQRFDFADAIANVSTYLYLHKSLQGKKNIKELIPY 135

Query: 139 LVGIPKGTTYGTLLKEHYPYIQQVEYEGHLEALTLLESGRVDGVVDAINQLK-PMLLKGL 197
            VGI  G+++   L+   P +    Y+     L  + +G           L+ P   + +
Sbjct: 136 QVGIVSGSSHEAELRRLEPGLVFKYYQSRETLLAGVAAGETVVFAGLDGYLRDPASNQTI 195

Query: 198 DVQL-LNDQLPIQPVSIVTPKGK-HSALLGKIE 228
            V   LN ++PI+ +  V    K ++ LL KI+
Sbjct: 196 AVNYPLNIRIPIKAMQFVPAVMKGNTELLNKIK 228