Pairwise Alignments

Query, 693 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 483 a.a., diguanylate cyclase (RefSeq) from Shewanella sp. ANA-3

 Score = 95.5 bits (236), Expect = 5e-24
 Identities = 110/440 (25%), Positives = 183/440 (41%), Gaps = 58/440 (13%)

Query: 278 NPQYALYQP--DGSVRGISADVVFQACEMLLLKCELVSNGQETWESMFDDLQDKSIDILA 335
           +P +  Y+   DG   GIS+D +        LK  LV     +W    D LQ    D+  
Sbjct: 46  DPDWLPYEAIRDGQHVGISSDYIRYIEAHSSLKFSLVPT--TSWTQTLDFLQTGRCDLTP 103

Query: 336 PITVSQQRKNLAYFSESYYHPQAILVKREHYKDDVYSNVSELVAERIGVIKDDF-FEELL 394
            +  +  R+   +FS  Y+    +LV     KD+ +    E +  R   + D +   E +
Sbjct: 104 LLNKTVTREQFLHFSHVYFRSPNVLVS---LKDEPFLQGFENIGARTLAVPDGYRLAEYI 160

Query: 395 QQMLPNKILFSYASQEEKVQALLNKEVDYIVLNRANFNLLLRESTEMLPIVEDTMIGSFY 454
           Q   P       AS+   ++A+L K+VD  V +  + N  ++++           I  + 
Sbjct: 161 QHYYPKVRTIKVASEPAGLEAVLEKKVDLFVGSMFSVNAYIQQTG-----FNHLKIAGWG 215

Query: 455 QYDIAIGFAKNPLGATLAPLFSRAIKMLNTEQIIHTYDYQPNWRATLLAEKKYQRSTQWL 514
             +  +    +     L PL ++ +   N +++     YQ     T++ E  Y    Q +
Sbjct: 216 GPEDELRVGVSAGHEALLPLINQVLD--NVDELERIRIYQKWNNITIIDETNYLLIYQVI 273

Query: 515 FAMAFIVL------FMVAFY------------------------LHGISHTDNLTKLRNR 544
            A   +V       +M++ Y                        L  +S  D LTKL NR
Sbjct: 274 AATLLVVCLLVTRTYMISRYNRRLTDKNQQLEELRLQLEQSNTELEFLSTHDPLTKLYNR 333

Query: 545 ----RALYNRYRRGLSPR--LSLVYLDVNTFKSINDQYGHEVGDKVLKQLAQRIEAVWRG 598
               R   + +R   S +  + LV LD++ FK IND  GH VGD +L +L+  ++   R 
Sbjct: 334 HYFNRQFVHEHRAAASTQGAICLVMLDIDFFKEINDTLGHSVGDTILMELSSVLQHCVRE 393

Query: 599 RSY--RIGGDEFILIGECSAKRLEHVVAQCERFMFVDAERDVSFEVSV--AIGIAKNRER 654
                R GG+EF+++  C    LE V + C+R     +E   S +V +  + GIAK    
Sbjct: 394 SDVVARWGGEEFVIL--CHNTSLEAVKSLCQRITTAISEYHFSGDVQLTCSFGIAK-LAA 450

Query: 655 TESLNEVMHQADIAMYRAKA 674
            E +     +AD A+Y+AKA
Sbjct: 451 NEPMQSCFERADKALYQAKA 470



 Score = 28.1 bits (61), Expect = 0.001
 Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 12/121 (9%)

Query: 69  IAHHFNLEIEYVNYPSFNDILVAIETGNADFAANITYTDLRAQRFDFS----RPTNI--- 121
           I  H +L+   V   S+   L  ++TG  D    +  T  R Q   FS    R  N+   
Sbjct: 71  IEAHSSLKFSLVPTTSWTQTLDFLQTGRCDLTPLLNKTVTREQFLHFSHVYFRSPNVLVS 130

Query: 122 --EYTYLYSYGGLRLPELRLVGIPKGTTYGTLLKEHYPYIQQVEYEGHLEALTLLESGRV 179
             +  +L  +  +     R + +P G      ++ +YP ++ ++       L  +   +V
Sbjct: 131 LKDEPFLQGFENIGA---RTLAVPDGYRLAEYIQHYYPKVRTIKVASEPAGLEAVLEKKV 187

Query: 180 D 180
           D
Sbjct: 188 D 188