Pairwise Alignments

Query, 693 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 937 a.a., diguanylate cyclase (RefSeq) from Shewanella sp. ANA-3

 Score = 90.5 bits (223), Expect = 3e-22
 Identities = 97/435 (22%), Positives = 185/435 (42%), Gaps = 50/435 (11%)

Query: 275 LENNPQYALYQPDGSVRGISADVVFQACEMLLLKCELVSNGQETWESMFDDLQDKSIDIL 334
           L+  P        G   GI++DV     E L +  + V+   + W S+   L+   I + 
Sbjct: 507 LKQWPPMEFSDEQGQFAGINSDVSQLLAEQLRINIQPVAF--DDWHSLIGALRSGEIALA 564

Query: 335 APITVSQQRKNLAYFSESYY-HPQAILVKREHYKDDVYSNVSELVAERIGVIKDDFFEEL 393
             I  + +R+    FSE Y+  P  ++ + E        N+++L  +R+ V++       
Sbjct: 565 GSIAQTAERQQFLTFSEPYWPSPWGLVSQLEQVS---VFNLAQLAGQRVAVVEGYHLVAQ 621

Query: 394 LQQMLPNKILFSYASQEEKVQALLNKEVDYIVLNRANFNLLLRESTEMLPIVEDTMIGSF 453
           L  + P+  L      +  + A+ +   D  +         L+  T   P+++ +++   
Sbjct: 622 LMALQPSLKLVLVPDTQSGLSAVNDGHADVFIDKVVTLASELK--TGQYPLLKMSLLSDL 679

Query: 454 YQYDIAIGFAKNPLGATLAPLFSRAIKMLNTEQIIHTYDYQPNWRATLLAEKKYQRSTQW 513
              D    F  NP  A L PL +R +  ++       Y +  ++  T     +Y +  ++
Sbjct: 680 A--DQHSHFGLNPQYAPLVPLINRVLGQIDQHTQQQIYSHWVSFSLTT-DNSQYLQWIRY 736

Query: 514 LFAMAFIVLFMVAFYL---------------------HGISHTDNLTKLRNRRALYNRYR 552
           L   A ++  ++   L                     H  SH D LT+L NR  L +R  
Sbjct: 737 LLLGALVLSGVMVAVLVVNRRLNLEITRRIAAEKRLQHVASH-DALTQLPNRALLDDRLS 795

Query: 553 RGL------SPRLSLVYLDVNTFKSINDQYGHEVGDKVLKQLAQRIEAVWRGRS--YRIG 604
           + L          +L+++D++ FK INDQYGH VGD +L ++A  +    R      R G
Sbjct: 796 QALLAHRRDHSHFALLFIDLDGFKQINDQYGHPVGDALLLKVAGLLTKAIRNSDTVARFG 855

Query: 605 GDEFILI------GECSAKRLEHVVAQCERFMFVDAERDVSFEVSVAIGIAKNRERTESL 658
           GDEF+++       + + +  ++++        ++    V+ EV+++IG+       ++ 
Sbjct: 856 GDEFVILLNRVQDLDAATQVADNILHSLSSPFSIEG---VTVEVAISIGVVIYPRDGDTA 912

Query: 659 NEVMHQADIAMYRAK 673
            E+M +AD  MY+AK
Sbjct: 913 IELMKKADQLMYQAK 927



 Score = 33.1 bits (74), Expect = 6e-05
 Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 6/99 (6%)

Query: 85  FNDILVAIETGNADFAANITYTDLRAQRFDFSRPTNIEYTYLYSYGGLR----LPEL--R 138
           +N+ L  ++ G A     +  T  R Q FDF+ P     TYLY +  L+    + EL   
Sbjct: 76  WNESLQQLQQGKAQVHIGMGQTPEREQLFDFAEPIADVSTYLYLHKSLQGKKSIKELIPY 135

Query: 139 LVGIPKGTTYGTLLKEHYPYIQQVEYEGHLEALTLLESG 177
            +GI  G+++   L+   P +    YE   + L  + +G
Sbjct: 136 QIGIVSGSSHEAELRRIEPNLVFKYYESREKLLAGVAAG 174



 Score = 30.0 bits (66), Expect = 5e-04
 Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 3/97 (3%)

Query: 319 WESMFDDLQDKSIDILAPITVSQQRKNLAYFSESYYHPQAILVKREHYKDDVYSNVSELV 378
           W      LQ     +   +  + +R+ L  F+E        L   +  +     ++ EL+
Sbjct: 76  WNESLQQLQQGKAQVHIGMGQTPEREQLFDFAEPIADVSTYLYLHKSLQGK--KSIKELI 133

Query: 379 AERIGVIKDDFFEELLQQMLPNKILFSYASQEEKVQA 415
             +IG++     E  L+++ PN ++F Y    EK+ A
Sbjct: 134 PYQIGIVSGSSHEAELRRIEPN-LVFKYYESREKLLA 169