Pairwise Alignments

Query, 353 a.a., protease SohB from Vibrio cholerae E7946 ATCC 55056

Subject, 439 a.a., minor capsid protein C, degenerate (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 53.1 bits (126), Expect = 1e-11
 Identities = 52/221 (23%), Positives = 100/221 (45%), Gaps = 6/221 (2%)

Query: 124 LREEVSAILAVAQAGDEVLLRLETGGGMVHGYGLASSQLDRLKAAGL-PLTIAVDKVAAS 182
           +R  ++A LA  +    +LL + + GG V G    +  +   +A G  P+    + + AS
Sbjct: 101 IRPAIAAALA-DRGVRAILLDVASPGGTVAGMKELADYIGAERAKGTKPMAAYANGLMAS 159

Query: 183 GGYMMACIADKIVSAPFAIVGSIGVVAQLPNFHKLLKKNDIEFEQLTAGEYKRTLTMFGE 242
             YM+     ++++   A VGSIGV++   ++ K  +K  + +  LTAG++K        
Sbjct: 160 AAYMIGSATGRVLAPATATVGSIGVISVYEDWSKWNEKAGLSYAYLTAGQWKAVGNPDTP 219

Query: 243 NTDKAREKFKQELEETHQLFKDFIREHR--PALDLDKVATGEHWFGTQAKALGLVDEIQT 300
             D  R   ++ L   ++ F D +       A +L   A G+ +  ++A   GLV  I  
Sbjct: 220 LADNERAYLQERLTALYRHFTDGVSASMGLDAANLTTWADGKVFVASEAPQ-GLVTAIVA 278

Query: 301 SDDLIVAACKSKTVLLLRYTQKKKLADKLAGVAGDAADNVL 341
             +  +A   +K + + R     +  + LA +  +AA+  +
Sbjct: 279 DREAAIATL-AKEMTMDRANLASQHPELLASIEREAAEKAV 318