Pairwise Alignments

Query, 692 a.a., DNA polymerase III subunit gamma/tau from Vibrio cholerae E7946 ATCC 55056

Subject, 702 a.a., DNA polymerase III subunit gamma/tau from Pseudomonas fluorescens FW300-N2E3

 Score =  504 bits (1298), Expect = e-147
 Identities = 314/715 (43%), Positives = 408/715 (57%), Gaps = 43/715 (6%)

Query: 1   MSYLALARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAK 60
           MSY  LARKWRP  F E+VGQ+HVL AL NAL   RLHHAYLF+GTRGVGKTTI R+ AK
Sbjct: 1   MSYQVLARKWRPRSFREMVGQTHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAK 60

Query: 61  GLNCETGITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRF 120
            LNCETGIT+TPCG+C+ C+EID+GRFVDL+EIDAASRTKVEDTRELLDNVQY P+RGRF
Sbjct: 61  CLNCETGITSTPCGECSVCREIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRF 120

Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISV 180
           KVYLIDEVHMLS HSFNALLKTLEEPP YVKF+LATTDPQKLP TILSRCLQF LK ++ 
Sbjct: 121 KVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSRCLQFSLKNMTP 180

Query: 181 ENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVVKSDIVAHM 240
           E + + L  VL  E +  +  AL LL  AADGSMRDA+SLTDQAIA G G V +  V  M
Sbjct: 181 ERVVEHLTHVLSVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIAFGEGKVMAADVRAM 240

Query: 241 LGTLDTDHSLHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLHRIAMYQALPA 300
           LGTLD      +L A+     +A+++ +  LA+ G +W+G+L ++   LHR+A+ QALP 
Sbjct: 241 LGTLDHGQVYDVLHALLDGDAKALLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPE 300

Query: 301 TLDKSLPEASRIESLAKTLAPQDVQLYYQIALKGRQDLPLSPTARIGIEMLMLRMMAFRP 360
            +D    +  R+ +LA+ L  +DVQ YYQ+ L GR+DLPL+P  R G EM++LRM+AFRP
Sbjct: 301 GVDNGHGDRDRVLALAQALPAEDVQFYYQMGLIGRRDLPLAPDPRGGFEMVLLRMLAFRP 360

Query: 361 SHVSLA------------SVIVPPNTAVTAPTIA-----APTSQMAAAAPQPQPVAQSNV 403
           +  + A            + +   N+   AP +A     AP +   AAAP  QPVA+   
Sbjct: 361 ADTADAPRQPLKPVGISQATVDSANSVAGAPRVAPVIAPAPVTAAPAAAPL-QPVAE--- 416

Query: 404 SQSASQAMPHPVAPPMMAAQPVVESAVPVTQREASHSINAPEASVVTNTDTQSQASMPAL 463
              A    P PVAP ++ A  V   A PV   E    ++ P    V     Q  A  P L
Sbjct: 417 -VVAPAPAPEPVAPVVVPAPMVEAVAEPVAIVE--EVVDLPWNDPVEPEIVQQPAVEPVL 473

Query: 464 AGLRHQ--LRSKRQEVQNKGADGKKSDATSATPASALERIAQRAQQVQVSPERN-DEDEL 520
                Q  L        +         A +  P  ++  I      + +  E   DED +
Sbjct: 474 ETTAEQPDLTPMPTPTPDSVVPDAPEWAAAPIPEPSVADIDAATPGMDLDDEPPLDEDYI 533

Query: 521 EPE-EEIYQWRPMQPIEVAVKSEVTPTQLKKALEHEKTPEMGAKLIEEAVAQDAWSALVQ 579
           EP+ +  Y +      E A +    P     A+     P  G  L         W  L  
Sbjct: 534 EPDMDSAYSYLDELASEHAAEPAPAPEPEPAAM-----PATGLAL--------QWLELFP 580

Query: 580 RLETAKMVEQLALNSAFVR-QGDQISLTLRPSHAHLHNEKAQQELEQALNHVLGEACSLN 638
           +L  + M   +A N   +   GD   L L P+H+ L N   Q+ L  ALN       +++
Sbjct: 581 KLPISGMTGSIAANCTLIAVDGDHWLLHLDPAHSALFNATQQRRLNDALNQYHQRTLTVS 640

Query: 639 I-TVGQEGETPLELRERLYQQKLTSALHSLQTDPNVQFIERRFNAQLDSDSVRPI 692
           I  +  E ETP +   R    +   A  S+  DP +Q + ++F A + +D++ P+
Sbjct: 641 IELIKPEQETPAQAASRRRADRQREAEDSIHGDPFIQQMMQQFGAVIRNDTIEPV 695