Pairwise Alignments

Query, 692 a.a., DNA polymerase III subunit gamma/tau from Vibrio cholerae E7946 ATCC 55056

Subject, 670 a.a., DNA polymerase III, subunit gamma and tau from Pseudomonas stutzeri RCH2

 Score =  501 bits (1291), Expect = e-146
 Identities = 303/702 (43%), Positives = 408/702 (58%), Gaps = 47/702 (6%)

Query: 1   MSYLALARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAK 60
           MSY  LARKWRP  F E+VGQ+HVL AL NAL   RLHHAYLF+GTRGVGKTTI R+ AK
Sbjct: 1   MSYQVLARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAK 60

Query: 61  GLNCETGITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRF 120
            LNCETG+++TPCGQC+ C+EID+GRFVDL+E+DAASRTKVEDTRELLDNVQY P+RGR+
Sbjct: 61  CLNCETGVSSTPCGQCSVCREIDEGRFVDLIEVDAASRTKVEDTRELLDNVQYAPSRGRY 120

Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISV 180
           KVYLIDEVHMLS HSFNALLKTLEEPP +VKFLLATTDPQKLPVTILSRCLQF LK +  
Sbjct: 121 KVYLIDEVHMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFSLKNMPP 180

Query: 181 ENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVVKSDIVAHM 240
           E + + L  VL  E +  +  AL LL  AADGSMRDA+SLTDQAIA G G V +  V  M
Sbjct: 181 ERVVEHLTHVLSVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIAFGEGKVLAADVRAM 240

Query: 241 LGTLDTDHSLHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLHRIAMYQALPA 300
           LGTLD      +LQA+     +A+++ +  LA+ G +W G+L ++   LHR+A+ QALP 
Sbjct: 241 LGTLDHGQVYGVLQALLEGDARALLEAVRHLAEQGPDWAGVLAEILNVLHRVAIAQALPE 300

Query: 301 TLDKSLPEASRIESLAKTLAPQDVQLYYQIALKGRQDLPLSPTARIGIEMLMLRMMAFRP 360
            +D    +  R+ +LA+ L  +DVQ YYQ+ L GR+DLPL+P  R G EM++LRM+AFRP
Sbjct: 301 AVDNGQGDRDRVLALAQALPAEDVQFYYQMGLIGRRDLPLAPDPRSGFEMVLLRMLAFRP 360

Query: 361 S------HVSLASVIVPPNTAVTAPTIAAPTSQMAAAAPQPQPVAQSNVSQSASQAMPHP 414
           +         L ++ V P TA + P   A    +  + P   P A + V+ +     P P
Sbjct: 361 AGNDDAPRTPLKTLGVSPATADSKPAAVADMVPLGVS-PASAPTASAVVAPA-----PAP 414

Query: 415 VAPPMMAAQPVVESAVPVTQREASHSINAPE-ASVVTNTDTQSQASMPALAGLRHQLRSK 473
           +AP  +A      ++ P    E    ++  E A  V +        +P +A         
Sbjct: 415 IAPVSIAEPSAPAASEPAVAAEVKAPLSVEEQAPAVIDVPWNEPPDVPPVA--------- 465

Query: 474 RQEVQNKGADGKKSDATSATPASALERIAQRAQQVQVSPERNDEDELEPEEEIYQWRPMQ 533
                         +A +  P  A +   +    V V  E  D+DE    +E Y      
Sbjct: 466 -------------VEAGAVLPEPAPDSPDEHVASV-VQVEEPDDDEPPLTDEDY------ 505

Query: 534 PIEVAVKSEVTPTQLKKALEHEKTPEMGAKLIEEAVAQDA-WSALVQRLETAKMVEQLAL 592
             EV  ++E    +L  ++  E  P      +E A    A W  L  +L  + +   +A 
Sbjct: 506 -FEVENQAEAYLDELS-SVSDEPEPAEPLPAVEPATGLAAEWLELYLKLGLSGLTGSIAA 563

Query: 593 NSAFVR-QGDQISLTLRPSHAHLHNEKAQQELEQALNHVLGEACSLNITVGQ-EGETPLE 650
           N   +  +GD+  + L P+ + L N   Q+ L  ALN   G    L+I + + E ETP +
Sbjct: 564 NCTLIAVEGDRWLMHLDPAQSALFNPTQQRRLNDALNQYHGRTLQLDIVLQKPEQETPAQ 623

Query: 651 LRERLYQQKLTSALHSLQTDPNVQFIERRFNAQLDSDSVRPI 692
              R   ++  +A  S+ +DP VQ + ++F A +   ++ P+
Sbjct: 624 AANRRRAERQRAAEQSIHSDPLVQQLMQQFAAVIREGTIEPV 665